Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01830 ATGTCTCACATAGCCGTCGAGAGGAACAGGAGAAGACAGATGAATGAACATCTCAAAGTTTTAAGATCTTTGACCCCATGTTTCTATATCAAAAGGGGAGATCAAGCATCTATAATAGGGGGTGTTATAGAATTCATCAAGGAGTTACACCAAGTTCGTCAAGCTTTGGAGTCCCAGAAAAGAAGAAAGAGTTTGAGCCCTAGCCCTGGCCCAAGTCCACGAACACTGCAGCCAACGTTTCATCAACTTGATAGCTCCTCCATGATTGGGACCAATTCTTTCAAGGAACTAGGAGCAAGCTGCAACTCTCCTGTTGCGGATGTTGAAGTGAAAATCTCGGGTTCAAACGTGATCTTGAAAGTCATTTGCCACAGAATTCCTGGTCAAGTTGCAAAGATCATAACTGTTTTGGAGAGTCTTTCCTTTGAAGTTCTTCATTTGAACATCAGCAGCATGGAGGAGACTGTCCTGTACCAATTTGTGGTCAAGATTGAGCTGGGTTGTCAACTAAGCCTGGAGGAACTAGCAATGGAAGTGCAACAAAGCTTCTGCTCAGATGCTATAATTGCGCTTAGAAGCAAAGCAGCAAGTGATGACGTCGAAACAAACATACAACGTGTGCTTCTGCTGGCGCTAGCAGAAGCACCGTTGGAAATCAATACCCTATTCGATGAATATTTCGAGAATGAGCTCATGACACCTTCGCATCTTAAGAGATTCTTGGTCAAAGTGCAGAGGCAAAAGAAGGCCATTGAAGAAGACGCGCAAGCCATCATTGATAGCTTCAAGAATTTCCATCGTAGAGGGGTTGGCCTTAATCTTGAAACTTTCTTCAAGTACCTCTTCAGTGACGATAATCCTCCTCTTCTTCCTTCTCATGGGGTTGTCAAGGTTGTTGATTTTGGGGTTGTCGGGGCACAAACTCAGTCTGGAGTGATGACACAGCTGAAACTAGAACATACTGTTGGATGA 972 0.4403 MSHIAVERNRRRQMNEHLKVLRSLTPCFYIKRGDQASIIGGVIEFIKELHQVRQALESQKRRKSLSPSPGPSPRTLQPTFHQLDSSSMIGTNSFKELGASCNSPVADVEVKISGSNVILKVICHRIPGQVAKIITVLESLSFEVLHLNISSMEETVLYQFVVKIELGCQLSLEELAMEVQQSFCSDAIIALRSKAASDDVETNIQRVLLLALAEAPLEINTLFDEYFENELMTPSHLKRFLVKVQRQKKAIEEDAQAIIDSFKNFHRRGVGLNLETFFKYLFSDDNPPLLPSHGVVKVVDFGVVGAQTQSGVMTQLKLEHTVG 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01830 323 MobiDBLite consensus disorder prediction 61 79 - -
Gma13g01830 323 Pfam Phosphoinositide-specific phospholipase C, efhand-like 218 285 IPR015359 -
Gma13g01830 323 PANTHER TRANSCRIPTION FACTOR FAMA 1 189 IPR044283 GO:0003700|GO:0010052
Gma13g01830 323 Pfam Helix-loop-helix DNA-binding domain 2 49 IPR011598 GO:0046983
Gma13g01830 323 Gene3D - 1 64 IPR036638 GO:0046983
Gma13g01830 323 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983
Gma13g01830 323 SMART finulus 4 55 IPR011598 GO:0046983
Gma13g01830 323 PANTHER TRANSCRIPTION FACTOR MUTE 1 189 - -
Gma13g01830 323 Gene3D - 213 293 - -
Gma13g01830 323 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 68 IPR036638 GO:0046983
Gma13g01830 323 SUPERFAMILY EF-hand 218 293 IPR011992 -
Gma13g01830 323 MobiDBLite consensus disorder prediction 57 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01830 Gma-Chr13 33567986 33571756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01830 1 190 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06120 66.667 4.34e-86 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma13g01830 EF-hand_like 2.9e-05 CL0220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01830 - - gmx:100810771 372.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00984 15 8269434 8271406 Gma13g01830 13 33567986 33571756 GST