Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01821 ATGGATCAAAACAAGCAAGGTGAAGCAGCAGAAGGAGGGAATATTGGTCATCCAGCACATGGCAAGAACCAAGAAGAGCAATCTAACCCTATGATAGCACCTACAAATCCTCCCAAAAAGAAAAGCTTGGAGGAACAACTCAACGACTTCTGGGCAGCACAGCGCGAGGAAGCTAAGATGACCACTAATTTCAAGACTCACAGCTTGCCCTTGTCGAGGATTAAGAAGATCATTAAGACCGACAAGGATGTAAAGATGATATCTGCTGAGACTCCCGTGGTGTTTGCCAAAGCCTGTGAAATGTTCATCAAGGAGCTCACAATAAGGGCTTGGGCTAATACTGAGGCTCGCAAAGGGAAGATACTTTCCCAGCGTGACCTTGTATCCGCCATCTCCCAGACTGCTTCTTTTGATTTTCTCGATGATATTATGCCCAAGGATGCAGGCTTACCAAGAACAAGCATTGCTTCAACAGAGAATGCTTATCTAAACATGCCACCTCAGCAGAATGTTGCAGGCCTTCCATATGATGCTCCAACCATGGCCTTTCCTAATCTAAACCATCATGCTCCCAATTAG 579 0.456 MDQNKQGEAAEGGNIGHPAHGKNQEEQSNPMIAPTNPPKKKSLEEQLNDFWAAQREEAKMTTNFKTHSLPLSRIKKIIKTDKDVKMISAETPVVFAKACEMFIKELTIRAWANTEARKGKILSQRDLVSAISQTASFDFLDDIMPKDAGLPRTSIASTENAYLNMPPQQNVAGLPYDAPTMAFPNLNHHAPN 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01821 192 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 24 169 - -
Gma13g01821 192 MobiDBLite consensus disorder prediction 21 35 - -
Gma13g01821 192 Gene3D Histone, subunit A 34 146 IPR009072 GO:0046982
Gma13g01821 192 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA 24 169 IPR027170 GO:0003700|GO:0006355|GO:0016602
Gma13g01821 192 MobiDBLite consensus disorder prediction 1 43 - -
Gma13g01821 192 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 68 131 IPR003958 -
Gma13g01821 192 SUPERFAMILY Histone-fold 12 140 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01821 Gma-Chr13 33486382 33486960 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01821 47 147 CCAAT-HAP5 Transcription Factor Family AT1G56170 61.386 5.26e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Gma13g01821 CBFD_NFYB_HMF 1.1e-14 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01821 K08066 - gmx:100808635 385.956