Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01820 ATGGATCAAAACCAGCATGTTCAACCAGCACAAGAAGCATATGGCGAAAACCAATATCAATCTAACCCCGTGACGACACCTACCGTTCTTCCAACTCAGACATCTGATTCTTCTCTTTCATCATCCTACCCAAGACAGCACCCAAATGATCCCCAATTGGAAGCCATGTACGAGCTACGACAAGAACGCTTGCAACAACAACTCAACAACTTCTGGGCAAAACAGTGCCAGGAAATCCAGGAGGCCACTGATTTAAGGACTCACAGCTTGCCTTTGGCTAGGATTAAGAAGATTATGAAGTCTGATGAGGATGTAAAGCTGGTATCAGCTGAGGCTCCGGTGGTGTTTGCCAAGGCTTGTGAAATGTTCATTATGGAGCTCACTTTGAGGGCTTGGGCTAATGTTGAGGAGGACCAAAGGAAGATAATTAAGAAGCATGACATTGCATCTTCAATCTCAAGGGCAGATGTGTTTGATTTTCTTATTGATACTGTCCCCAGGCCGCTTGAAAATATATTGGATCAACAAGGGTTTGTAGGCCTACCAACAAGCACTGTTCCAACTCCATTGAATGATGCTTGCTATCATAATCCCCCTCCTCAGGCGCTTGTTCCGGGCAATCCATATGGTTCTCCAAGAATAGCTGTGGGAATGCCTATTCTTGATCAAAATCATCCTGGGCTGCAAATCCATCATTTTCTAACTCCAATGGAGCCCACCCCCACCCCCACCCCCAATCCCCAAAACCCTTCTCCTAGTTCGGATTGTTGA 771 0.4591 MDQNQHVQPAQEAYGENQYQSNPVTTPTVLPTQTSDSSLSSSYPRQHPNDPQLEAMYELRQERLQQQLNNFWAKQCQEIQEATDLRTHSLPLARIKKIMKSDEDVKLVSAEAPVVFAKACEMFIMELTLRAWANVEEDQRKIIKKHDIASSISRADVFDFLIDTVPRPLENILDQQGFVGLPTSTVPTPLNDACYHNPPPQALVPGNPYGSPRIAVGMPILDQNHPGLQIHHFLTPMEPTPTPTPNPQNPSPSSDC 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01820 256 SUPERFAMILY Histone-fold 59 161 IPR009072 GO:0046982
Gma13g01820 256 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 9 238 - -
Gma13g01820 256 MobiDBLite consensus disorder prediction 1 48 - -
Gma13g01820 256 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 89 151 IPR003958 -
Gma13g01820 256 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 9 238 - -
Gma13g01820 256 MobiDBLite consensus disorder prediction 1 50 - -
Gma13g01820 256 MobiDBLite consensus disorder prediction 234 256 - -
Gma13g01820 256 Gene3D Histone, subunit A 53 167 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01820 Gma-Chr13 33470087 33470857 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01820 1 219 CCAAT-HAP5 Transcription Factor Family AT1G08970 43.636 5.64e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Gma13g01820 CBFD_NFYB_HMF 1.1e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01820 K08066 - gmx:100807580 458.759