Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01801 ATGATGCAGCAGCCAGGACCCGGCATGGCACCTCCCACCATGGGCCAGCAGCCGCCGCAACAGTACCAGCAGCCTCCGCCGCAGCAGCAGCAACCCTACGTCATGATGCCGCCGCAGGCCCAGGCCCCGCAGGCCATGTGGGCCCCCTCCGCCCAGCCTCCGCCTCAGCAGCAGCCCGCCAGCGCCGACGAGGTCCGAACCCTCTGGATCGGGGATCTGCAGTACTGGATGGACGAGAACTATCTCTATACCTGCTTTGCTCACACCGGCGAGGTTACATCGGTTAAAGTAATTCGAAACAAGCAAACTAGTCAATCTGAAGGTTATGGGTTTATTGAGTTTAATAGTCGTGCTGGAGCTGAGAGAATTCTTCAAACATATAATGGGGCAATAATGCCAAATGGGGGGCAGAGTTTCAGGTTGAATTGGGCAACTTTTAGTGCTGGTGAGAGGTCGCGCCACGACGATTCTCCAGATTACACCATATTTGTTGGTGACTTGGCTGCAGATGTTACTGATTATCTTCTTCAGGAGACATTTAGGGCTCGTTATAACTCGGTGAAGGGTGCAAAAGTTGTCATTGATAGGCTAACTGGCCGGACCAAGGGATATGGCTTTGTAAGGTTTTCAGATGAGAGTGAGCAAGTGAGGGCTATGACTGAGATGCAAGGGGTTCTTTGCTCAACAAGACCCATGAGGATTGGACCCGCCTCTAATAAAACCCCCACCACTCAGTCCCAGCCCAAAGCTTCATATCAGAATTCTCAACCTCAAGGTTCACAGAATGAGAATGATCCAAATAATACAACTATTTTTGTTGGTAATTTGGATCCTAATGTCACTGATGATCATCTGAGGCAAGTTTTCAGCCAGTATGGAGAATTAGTGCATGTGAAGATTCCAGCAGGCAAGCGATGTGGGTTTGTCCAATTCGCAGACAGGAGCTGTGCCGAAGAGGCACTTCGGGTGTTGAATGGGACCCTGTTGGGTGGTCAAAATGTTCGTCTTTCATGGGGCCGCAGTCCTTCAAACAAACAGgctcaggcagatccaaaccagtggaatggtggtgctggttctggtggtggatactatgggtatgctgcacaaggttatgaaaattatgggtatgctcctgctgctggacaggatcccaacatgtatggcagttatccggggtatcctggttaccaaccacctcagcaacagcaacaaataggATATAGTTGA 1230 0.4309 MMQQPGPGMAPPTMGQQPPQQYQQPPPQQQQPYVMMPPQAQAPQAMWAPSAQPPPQQQPASADEVRTLWIGDLQYWMDENYLYTCFAHTGEVTSVKVIRNKQTSQSEGYGFIEFNSRAGAERILQTYNGAIMPNGGQSFRLNWATFSAGERSRHDDSPDYTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVRFSDESEQVRAMTEMQGVLCSTRPMRIGPASNKTPTTQSQPKASYQNSQPQGSQNENDPNNTTIFVGNLDPNVTDDHLRQVFSQYGELVHVKIPAGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQAQADPNQWNGGAGSGGGYYGYAAQGYENYGYAPAAGQDPNMYGSYPGYPGYQPPQQQQQIGYS 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01801 409 CDD RRM2_SECp43_like 159 238 - -
Gma13g01801 409 CDD RRM1_SECp43_like 67 147 - -
Gma13g01801 409 MobiDBLite consensus disorder prediction 234 275 - -
Gma13g01801 409 CDD RRM3_NGR1_NAM8_like 268 339 - -
Gma13g01801 409 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 160 239 IPR000504 GO:0003723
Gma13g01801 409 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 20 406 - -
Gma13g01801 409 SUPERFAMILY RNA-binding domain, RBD 65 239 IPR035979 GO:0003676
Gma13g01801 409 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 66 146 IPR000504 GO:0003723
Gma13g01801 409 SMART rrm1_1 270 337 IPR000504 GO:0003723
Gma13g01801 409 SMART rrm1_1 161 235 IPR000504 GO:0003723
Gma13g01801 409 SMART rrm1_1 67 142 IPR000504 GO:0003723
Gma13g01801 409 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 269 341 IPR000504 GO:0003723
Gma13g01801 409 MobiDBLite consensus disorder prediction 388 409 - -
Gma13g01801 409 SUPERFAMILY RNA-binding domain, RBD 255 367 IPR035979 GO:0003676
Gma13g01801 409 MobiDBLite consensus disorder prediction 1 63 - -
Gma13g01801 409 Gene3D - 9 155 IPR012677 -
Gma13g01801 409 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 20 406 - -
Gma13g01801 409 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 271 334 IPR000504 GO:0003723
Gma13g01801 409 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 68 133 IPR000504 GO:0003723
Gma13g01801 409 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 162 225 IPR000504 GO:0003723
Gma13g01801 409 Gene3D - 159 235 IPR012677 -
Gma13g01801 409 MobiDBLite consensus disorder prediction 11 33 - -
Gma13g01801 409 MobiDBLite consensus disorder prediction 229 275 - -
Gma13g01801 409 Gene3D - 242 378 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01801 Gma-Chr13 33345049 33349438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01801 67 365 Eukaryotic Initiation Factors Gene Family AT2G23350 25.658 1.93e-25 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01801 - - gmx:100801562 660.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g01006 15 8450117 8454140 Gma13g01801 13 33345049 33349438 GST
Gma17g00131 17 1112489 1116813 Gma13g01801 13 33345049 33349438 PCT