Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01738 ATGTCTATACAACATGAAAATCCTGAGACAAAAGATGTAATATGTCCACAGAAAAGGATAGCAGATCTTATGCATCACGCTGGAAACAAGTTTTGCGCTGATTGTGGAACACCAGAGCCAAGATGGGTGTCTTCAAGTCTTGGAGTATTTATTTGCATCAAGTGTTCTGGCATACATAGAAGTCTAGGAGTCCACATATCAAAGGTTCTATCACTGAAGCTAGATGAATGGACAGATGAACAAGTTGATGCATTAGCAAAGTTGGGTGGCAATACATTATTAAATAAGAAGTACGAAGCTTGCCTTCCAAGTAACATAAGAAAACCAAAACCACATTCATCCATTGAGGAGCGCTCTGAATTTATTCGGAGAAAATATGAGATGCAGCAATTTGTCGACTGTGATGACAATTTGTCATGCCCCATTATCCCATCTCAAGGAAGAAGCATATCACTTGCTCTTGCTCAGAGTAGCACTTCATACTACAATTCTTTTATGGACAAGAAACCATCTGAAAAACAACAAAGCAAACATCGTATTGGGAACGCATTCCGAAACAGCTGGGGAAGAAAAGATTCTGAGCACAAGGCTGCAAAGAAGAGTACCTCTTTGGCAGGTATGGTTGAATTTGTTGGGCTGATTAAGGTTAATGTGGTTAAAGGCACTCACCTAGCCATTCGAGATGTAATGACTAGTGACCCTTATGTCATCCTTTCTTTGGGTCACCAATCAGTAAAAACACGTGTCATAAAGAGCAATTTGAATCCGGTTTGGAATGAGAGCCTAATGCTATCAATTCCAGAGAACATTCCTCCTCTAAAAGTGCTTGTGTATGACAAGGATACATTTTCAACTGATGATTTTATGGGGGAGGCTGAAATAGACATTCAACCTCTAGTTATTGCCGCAAAGGCCTACGAGAAATCGAATATTAATGAGTCCATGCAACTTGGGAAATTTGTAGCAAGCAACGACAACACCCTTGTTAGAGATGGTATCATATCTCTTGATGAAGGGAAAATCAAACAGGAAATCTCAGTTAGGCTACAAAATATTGAGAGGGGTGAGTTGGAGCTTGAGCTTGAGTGTGTTCCCCTTACTCAATAG 1107 0.4011 MSIQHENPETKDVICPQKRIADLMHHAGNKFCADCGTPEPRWVSSSLGVFICIKCSGIHRSLGVHISKVLSLKLDEWTDEQVDALAKLGGNTLLNKKYEACLPSNIRKPKPHSSIEERSEFIRRKYEMQQFVDCDDNLSCPIIPSQGRSISLALAQSSTSYYNSFMDKKPSEKQQSKHRIGNAFRNSWGRKDSEHKAAKKSTSLAGMVEFVGLIKVNVVKGTHLAIRDVMTSDPYVILSLGHQSVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVIAAKAYEKSNINESMQLGKFVASNDNTLVRDGIISLDEGKIKQEISVRLQNIERGELELELECVPLTQ 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01738 368 CDD ArfGap 20 126 - -
Gma13g01738 368 Pfam C2 domain 213 299 IPR000008 -
Gma13g01738 368 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 209 303 IPR035892 -
Gma13g01738 368 ProSiteProfiles C2 domain profile. 195 310 IPR000008 -
Gma13g01738 368 Gene3D C2 domain 211 368 IPR035892 -
Gma13g01738 368 SUPERFAMILY ArfGap/RecO-like zinc finger 17 132 IPR037278 -
Gma13g01738 368 Gene3D Arf GTPase activating protein 3 138 IPR038508 -
Gma13g01738 368 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 15 368 IPR044518 GO:0005096|GO:0005543
Gma13g01738 368 SMART arf_gap_3 17 139 IPR001164 GO:0005096
Gma13g01738 368 SMART C2_3c 213 308 IPR000008 -
Gma13g01738 368 PANTHER CALCIUM-DEPENDENT ARF-TYPE GTPASE ACTIVATING FAMILY PROTEIN 15 368 - -
Gma13g01738 368 CDD C2_ArfGAP 211 355 - -
Gma13g01738 368 Pfam Putative GTPase activating protein for Arf 18 133 IPR001164 GO:0005096
Gma13g01738 368 PRINTS HIV Rev interacting protein signature 29 48 IPR001164 GO:0005096
Gma13g01738 368 PRINTS HIV Rev interacting protein signature 48 65 IPR001164 GO:0005096
Gma13g01738 368 PRINTS HIV Rev interacting protein signature 69 90 IPR001164 GO:0005096
Gma13g01738 368 ProSiteProfiles ARF GTPase-activating proteins domain profile. 17 139 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01738 Gma-Chr13 32592184 32598042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01738 17 368 C2H2 Transcription Factor Family AT4G21160 47.443 1.03e-120 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01738 K12486 - gmx:100789552 738.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g01738 13 32592184 32598042 Gma15g02283 15 47828860 47840770 GST
Gma15g02283 15 47828860 47840770 Gma13g01738 13 32592184 32598042 PCT
Gma13g01738 13 32592184 32598042 Gma15g02283 15 47828860 47840770 PCT