Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01728 ATGAACATGTTAGGCCTTAGAGACCTAGTTTTCATAGCTCCAACTCCTTCTCAACTTCACCACCATCAACAACACCAACCCATTTCAGCAGAACACCATTCAAACCTCCCTTTGCCTTCACAAGCCTCTCTCAGTGTTGGTCTTGGCATTTTCCCTCTCCTAACAGTGCCACACACCAATGATGTTCAAGTTCAGGTTCAAGACTGTGCCAACAACAACAACAACACCAACACCAACTATTGGAACCTGAAGATGTGTGGTGCCACTGAAGTGAATTCCACAAGAAAAGGTGTTATGAACATGGAGGATGAGGGAAGCAATAAGCAAATGATGGAGAGTGAGGAAGGTGGGGGTGAGTTTAGGGTGTGCCAGGATTGTGGCAATAGAGCCAAGAGAGATTGCAGCTTCAGAAGGTGCAGGACTTGCTGCAAGGGACGTGGCTTTGATTGCAGCACTCACGTGAAGAGCACGTGGGTCCCCGCGTCTATGAGACGGGGTGGTGGTGGTGATAGTAGTGGTGGTGATGGCAACAGCGATGCTGGTGCTTCTAAGAGGCTAAGAACTTTGGGGTCATCAAAGAATGTTGCTGCTAGTGCTACCTCTCATAGTTCCACTTCCAATGCTACCCCAACAAAGAGCTTTGATACCAGTTCTTGTCAACAAGATGCTGGTTTCAAACAGTCTTTGCCACGGCACGTGCGTGCACCTGCGGTTTTTAGGTGCCATAGAGTGTCTGCTATTGGGAGTGGTGAAGATGAGATTGTTTACATGGCCACAGTTCATATTAGTGGCCATGTTTTTAAGGGGTTTCTGTATGATCATGGTGCTGATGCCAGAAATGATGTGCCTAGTGTCTCAGAACTGCAATTGGGAAACAATGGAAGTGGAAAGAATAATAATAGGGAATGCTCTTCTGCAATTGGGGTTCCAACTAGTGCTTACCCTGCTTCTGTTTGCTGA 960 0.4708 MNMLGLRDLVFIAPTPSQLHHHQQHQPISAEHHSNLPLPSQASLSVGLGIFPLLTVPHTNDVQVQVQDCANNNNNTNTNYWNLKMCGATEVNSTRKGVMNMEDEGSNKQMMESEEGGGEFRVCQDCGNRAKRDCSFRRCRTCCKGRGFDCSTHVKSTWVPASMRRGGGGDSSGGDGNSDAGASKRLRTLGSSKNVAASATSHSSTSNATPTKSFDTSSCQQDAGFKQSLPRHVRAPAVFRCHRVSAIGSGEDEIVYMATVHISGHVFKGFLYDHGADARNDVPSVSELQLGNNGSGKNNNRECSSAIGVPTSAYPASVC 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01728 319 Pfam Domain of unknown function (DUF702) 122 277 - -
Gma13g01728 319 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 229 275 IPR006511 -
Gma13g01728 319 MobiDBLite consensus disorder prediction 17 36 - -
Gma13g01728 319 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 122 164 IPR006510 -
Gma13g01728 319 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 2 319 IPR007818 GO:0003700|GO:0006355
Gma13g01728 319 PANTHER LRP1 CARBOXY-TERMINAL DOMAIN PROTEIN 2 319 - -
Gma13g01728 319 MobiDBLite consensus disorder prediction 160 217 - -
Gma13g01728 319 MobiDBLite consensus disorder prediction 184 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01728 Gma-Chr13 32463871 32468871 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01728 1 306 C2H2 Transcription Factor Family AT5G12330 41.796 9.85e-62 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Gma13g01728 DUF702 3.1e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01728 - - gmx:100777812 587.415