Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01708 ATGTCGAAGGCAGTTTCAGAATCTACTGATATTAGGGTttacgatgttttcctcagttttagaggagaagacactagacgcagtttcacggggaatctctacaattgtttggagaaaaggggaatccataccttcattggcgactacgattttgagagtggagaggaaatcaaagcatcactttcggaggcgattgaacattcgagagttttcgttatagtgttctccgagaactatgcttcttcttcttggtgcttagatggacttgtacgtatccttgacttcactgaggataaccatcgaccggttattccagttttctttgacgttgaaccgtcccatgtgaggcatcagaaggggatctatggagaagcactggctatgcatgagagaagactcaaccccgagtcgtacaaagtcatgaaatggaggaacgcactgcgtcaagccgctaacttgtccggTTATGCTTTCAAACATGGGGATGGATATGAATACAAGTTGATTGAGAAGATTGTGGAGGACATTTCCAACAAGATTAAGATTAGTCGACCTGTTGTGGATCGCCCAGTTGGCCTCGAGTATCGAATGCTTGAAGTAGACTGGCTTCTGGATGCCACATCCCTTGCtggagtacatatgatagggatttgtggcataggtggcattggaaaaacaacacttgcCCGTGCTGTATACCATTCCGCTGCTGGCCACTTTGATACCTCGTGTTTCCTTGGTAACGTCAGGGAAAATGCTATGAAGCATGGCTTAGTGCATCTCCAGCAAACCCTGCTTGCTGAGATATTCCGTGAGAACAATATTCGTCTGACAAGTGTCGAGCAAGGAATTTCACTAATAAAGAAGATGCTCCCCAGGAAGAGGCTTCTTTTGGTTCTTGACGATGTCTGTGAGCTAGATGACTTGCGAGCTCTTGTTGGAAGTCCTGATTGgtttggccctggcagcagagtcatcattaccactagagacagacatttgcttaaagcccatggggttgacaaggtatacgaggtggaagttttggccaatggtgaagctctcgaattgctttgttggaaggccttcagaaccgacagagttcatccagatttcattaataaattaaaccgtgcaatcacttttgcttccggcattcctttggctcttgaacttataggttcaagcttgtatggtagaggaatagaagaatgggaatctactttggatcagtatgaaaaaaatcctcctagagacatacacatggcacttaaaatatcctttgatgctctgggttacctcgagaaggaggtttttctagacattgcatgtttcttcaatggatttgaattagcagagatcgagcatatacttggtgcacatcacggttgttgtttgaaatttcatattggagcattggtggaaaaatctcttataatgattgacgagcatggccgtgttcagatgcacgatttgatacaacaaatgggtagagaaattgttcgacaggaatcaccggagcaccctggcaaacgcagtaggttatggtctactgaggatatagttcatgttttagaagataacacgGGAACATGTAAAATTCAAAGTATAATTCTGGATTTCTCCAAATCTGAAAAAGTGGTACAATGGGATGGAATGGCCTTCGTGAAGATGATAAGCCTCAGAACACTTATTATCAGAAAGGAGTGTTTTTCCAAAGGTCCAAAAAAACTTCCAAATAGCTTAAGAGTGCTGGAGTGGTGGGGCTGTCCCTCAAAGTCTTTACCATCCGATTTTAAGCCAGAGAAACTAGCTATACTGAAGTTACCCTATAGTGGCTTTATGTCACTTGAGTTGCCAAACTTTTTGCACATGAGAGTTTTGAATTTTGACAGGTGTGAATTTTTAACACGGACACCTGATTTATCTGGTTTCCCAATTTTAAAAGAATTATTTTTTGTTTTTTGTGAGAATTTAGTTGAAATTCATGATTCGGTTGGATTCCTAGATAAACTTGAAATCATGAACTTTGAGGGTTGTAGCAAGCTTGAGACTTTTCCACCAATCAAGTTGACCTCTCTTGAAAGCATCAACCTTTCGCATTGTTCAAGTCTTGTGAGTTTTCCTGAAATATTAGGAAAGATGGAAAACATAACGCATCTTTCTTTGGAGTACACTGCCATAAGTAAATTACCAAATTCAATTAGAGAACTTGTCCGACTTCAAAGTTTAGAACTGCACAACTGTGGAATGGTTCAGTTACCGAGTAGCATTGTCACATTGCGAGAACTTGAGGTGTTGAGTATTTGCCAATGTGAAGGGTTGCGATTTTCAAAACAGGACGAAGATGTGAAAAATAAGAGCTTACTGATGCCCTCTTCATATTTGAAACAAGTCAATTTATGGTCCTGCAGTATATCTGATGAATTCATTGATACAGGACTCGCTTGGTTTGCCAATGTGAAAAGCTTAGATCTTTCAGCAAATAATTTTACAATTCTTCCTTCATGCATCCAAGAATGTCGCCTTTTGAGGAAACTATATTTGGACTACTGTACGCATCTTCATGAAATTAGGGGGATTCCACCCAATTTAGAAACATTATCTGCAATTCGGTGCACATCCTTGAAAGATTTAGACCTTGCAGTTCCTCTTGAATCCACCAAAGAAGGTTGCTGTTTGAGACAACTTATTTTGGATGATTGTGAGAATCTTCAAGAAATTAGAGGGATTCCACCAAGCATAGAGTTTTTGTCTGCAACAAACTGCAGATCCTTGACTGCCTCATGTAGGAGAATGCTACTGAAACAGGAGTTGCATGAGGCTGGAAATAAGAGATATTCTTTGCCAGGAACAAGGATTCCAGAATGGTTTGAGCACTGCAGCAGGGGACAATCAATTTCCTTTTGGTTTCGTAACAAGTTCCCAGTAATATCTCTCTGTCTTGCTGGACTCATGCATAAGCACCCTTTTGGACTTAAACCTATTGTGTCCATTAATGGCAATAAAATGAAGACCGAGTTTCAAAGGAGATGGTTTTATTTCGAGTTCCCAGTATTAACTGATCATATACTTATATTTGGTGAAAGGCAGATTAAATTTGAAGATAATGTGGATGAAGTAGTTTCAGAAAATGATTGGAATCATGTAGTGGTCTCTGTTGATGTTGATTTCAAATGGAACCCAACAGAGCCGCTTGTTGTGCGGACTGGACTCCATATTGCTATTGATGGAGGCAAGCAATTGTTGGCATTAATTTCTCCTTTTGTTATGAATTACTTGGGGTGGAGAGTGGCTTTCATTCCCTCAACCTCTGGATTATTCAAATTTGGTACTATGATGAGAAGCACCGCTGGTGTCCAAGGAGAATCAGGTGAGAAGCCAGAAATGCCAACGTTCCTCAAGCTTTAA 3411 0.2685 MSKAVSESTDIRVYDVFLSFRGEDTRRSFTGNLYNCLEKRGIHTFIGDYDFESGEEIKASLSEAIEHSRVFVIVFSENYASSSWCLDGLVRILDFTEDNHRPVIPVFFDVEPSHVRHQKGIYGEALAMHERRLNPESYKVMKWRNALRQAANLSGYAFKHGDGYEYKLIEKIVEDISNKIKISRPVVDRPVGLEYRMLEVDWLLDATSLAGVHMIGICGIGGIGKTTLARAVYHSAAGHFDTSCFLGNVRENAMKHGLVHLQQTLLAEIFRENNIRLTSVEQGISLIKKMLPRKRLLLVLDDVCELDDLRALVGSPDWFGPGSRVIITTRDRHLLKAHGVDKVYEVEVLANGEALELLCWKAFRTDRVHPDFINKLNRAITFASGIPLALELIGSSLYGRGIEEWESTLDQYEKNPPRDIHMALKISFDALGYLEKEVFLDIACFFNGFELAEIEHILGAHHGCCLKFHIGALVEKSLIMIDEHGRVQMHDLIQQMGREIVRQESPEHPGKRSRLWSTEDIVHVLEDNTGTCKIQSIILDFSKSEKVVQWDGMAFVKMISLRTLIIRKECFSKGPKKLPNSLRVLEWWGCPSKSLPSDFKPEKLAILKLPYSGFMSLELPNFLHMRVLNFDRCEFLTRTPDLSGFPILKELFFVFCENLVEIHDSVGFLDKLEIMNFEGCSKLETFPPIKLTSLESINLSHCSSLVSFPEILGKMENITHLSLEYTAISKLPNSIRELVRLQSLELHNCGMVQLPSSIVTLRELEVLSICQCEGLRFSKQDEDVKNKSLLMPSSYLKQVNLWSCSISDEFIDTGLAWFANVKSLDLSANNFTILPSCIQECRLLRKLYLDYCTHLHEIRGIPPNLETLSAIRCTSLKDLDLAVPLESTKEGCCLRQLILDDCENLQEIRGIPPSIEFLSATNCRSLTASCRRMLLKQELHEAGNKRYSLPGTRIPEWFEHCSRGQSISFWFRNKFPVISLCLAGLMHKHPFGLKPIVSINGNKMKTEFQRRWFYFEFPVLTDHILIFGERQIKFEDNVDEVVSENDWNHVVVSVDVDFKWNPTEPLVVRTGLHIAIDGGKQLLALISPFVMNYLGWRVAFIPSTSGLFKFGTMMRSTAGVQGESGEKPEMPTFLKL 1136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01708 1136 Gene3D Ribonuclease Inhibitor 525 706 IPR032675 -
Gma13g01708 1136 PRINTS Disease resistance protein signature 689 705 - -
Gma13g01708 1136 PRINTS Disease resistance protein signature 214 229 - -
Gma13g01708 1136 PRINTS Disease resistance protein signature 383 397 - -
Gma13g01708 1136 PRINTS Disease resistance protein signature 290 304 - -
Gma13g01708 1136 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 16 876 - -
Gma13g01708 1136 ProSiteProfiles TIR domain profile. 12 180 IPR000157 GO:0007165
Gma13g01708 1136 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 893 960 IPR044974 GO:0006952
Gma13g01708 1136 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 156 IPR035897 -
Gma13g01708 1136 Pfam NB-ARC domain 210 416 IPR002182 GO:0043531
Gma13g01708 1136 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 893 960 - -
Gma13g01708 1136 Gene3D - 348 432 IPR042197 -
Gma13g01708 1136 Gene3D Ribonuclease Inhibitor 707 942 IPR032675 -
Gma13g01708 1136 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 442 IPR027417 -
Gma13g01708 1136 Gene3D - 181 343 IPR027417 -
Gma13g01708 1136 SUPERFAMILY "Winged helix" DNA-binding domain 419 526 IPR036390 -
Gma13g01708 1136 Gene3D - 10 180 IPR035897 -
Gma13g01708 1136 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 876 IPR044974 GO:0006952
Gma13g01708 1136 Pfam TIR domain 14 183 IPR000157 GO:0007165
Gma13g01708 1136 SMART till_3 13 153 IPR000157 GO:0007165
Gma13g01708 1136 SUPERFAMILY L domain-like 549 935 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01708 Gma-Chr13 32203513 32209077 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01708 14 785 WRKY Transcription Factor Family AT4G12020 32.214 1.91e-87 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01708 - - gmx:100817027 2168.66