LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma13g01679	ATGCTTCATTCAATCGATTTGAAAACAGGTGTGTTCTTAATGGAAAAGATCTCACCCCGTTTTGGTAAAGTTGCTTGTGGAGATATTGTAGTCTTGCTCAATCCTCAACACCCTAGGCACTTTATGACCAAACGTGTGGTTGGATTGGAGGGTGATAGCGTTACATACATTTCCAATCCTGAGACCTATGAATATGAGGGTGATAGTTTTACACGCATTTCCTCTCCTGATAACGGTGATAAGTCTAAGACGATTGTG	258	0.4109	MLHSIDLKTGVFLMEKISPRFGKVACGDIVVLLNPQHPRHFMTKRVVGLEGDSVTYISNPETYEYEGDSFTRISSPDNGDKSKTIV	86

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma13g01679	86	CDD	S26_SPase_I	7	52	IPR019533	GO:0004252\|GO:0006465
	Gma13g01679	86	Pfam	Signal peptidase, peptidase S26	11	56	IPR019533	GO:0004252\|GO:0006465
	Gma13g01679	86	Gene3D	Umud Fragment, subunit A	1	85	-	-
	Gma13g01679	86	MobiDBLite	consensus disorder prediction	67	86	-	-
	Gma13g01679	86	PANTHER	PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED	1	86	-	-
	Gma13g01679	86	SUPERFAMILY	LexA/Signal peptidase	13	58	IPR036286	-
	Gma13g01679	86	PANTHER	PEPTIDASE S24/S26A/S26B/S26C FAMILY PROTEIN	1	86	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma13g01679	Gma-Chr13	31761840	31762097	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma13g01679	11	57	MADS-box Gene Family	AT1G29960	44.681	1.70e-09	48.9

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma13g01679	K09647		-	gmx:100805997	164.851

Showing 1 to 1 of 1 entries