Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01678 ATGATATTGAGAAACCTGGAGGCATTTGTGCCTATTATTAAAGCAGGATGGAGGTTTTCTAAGATCTACTGTTTTATACACGTTACCCAAACCTATTTGATCGCCCCTGCTGTGACCTATGGTCCTAGCATGCTTCCTACTATCGATTTGAAAACAGCTGTGTTCTTAATGGAAAAGATCTCACCCCGGTTTGGTAAAGTTACTTGTGGAGATATTGTAGTCTTGCGCAATCCTCAACACCCTAGGCACTTTATGACCAAACGTGTGGTTGGATTGGAGGGTGATAGCGTTACATACATTTCCAATCCTGAGACCTATGAATATGAGGGTGATAGTTTTACACACATTTCCTCTCCTGATAACGGTGATAAGTCTAAGACGATTGTGGTGCCAAAGGGTGCCGTTTGGGTTGAGGGAGATAACAAGTATAACAGCAATGATTCAAGAAAATTTGGTCCTGTTCCTTATGACCTTATTGATGGCAAGATGTTCTGGAGGATAACGCCACTTAAAAAATTTGGACCTTTCTGGAATAAATGA 540 0.4111 MILRNLEAFVPIIKAGWRFSKIYCFIHVTQTYLIAPAVTYGPSMLPTIDLKTAVFLMEKISPRFGKVTCGDIVVLRNPQHPRHFMTKRVVGLEGDSVTYISNPETYEYEGDSFTHISSPDNGDKSKTIVVPKGAVWVEGDNKYNSNDSRKFGPVPYDLIDGKMFWRITPLKKFGPFWNK 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01678 179 Pfam Signal peptidase, peptidase S26 21 166 IPR019533 GO:0004252|GO:0006465
Gma13g01678 179 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 1 178 - -
Gma13g01678 179 Gene3D Umud Fragment, subunit A 29 178 - -
Gma13g01678 179 SUPERFAMILY LexA/Signal peptidase 31 177 IPR036286 -
Gma13g01678 179 PANTHER PEPTIDASE S24/S26A/S26B/S26C FAMILY PROTEIN 1 178 - -
Gma13g01678 179 ProSitePatterns Signal peptidases I signature 3. 135 148 IPR019758 GO:0004252|GO:0016021
Gma13g01678 179 PRINTS Bacterial leader peptidase 1 (S26A) family signature 32 48 IPR000223 GO:0006508|GO:0008236|GO:0016020
Gma13g01678 179 PRINTS Bacterial leader peptidase 1 (S26A) family signature 85 97 IPR000223 GO:0006508|GO:0008236|GO:0016020
Gma13g01678 179 PRINTS Bacterial leader peptidase 1 (S26A) family signature 130 149 IPR000223 GO:0006508|GO:0008236|GO:0016020
Gma13g01678 179 CDD S26_SPase_I 36 162 IPR019533 GO:0004252|GO:0006465
Gma13g01678 179 TIGRFAM sigpep_I_bact: signal peptidase I 24 170 IPR000223 GO:0006508|GO:0008236|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01678 Gma-Chr13 31715851 31718843 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01678 44 176 MADS-box Gene Family AT1G29960 42.857 6.93e-33 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01678 K09647 - gmx:100805997 377.867