Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01631 ATGGCGGATGCTGATGTGGACCTTTCGGGATTGTTCACCGGTAATGCCGACGAAGACGACGACATGTTTTATATAGATATGCAGACGGTCCAGAAGGTTCTTGATGAAGACGACGATTGTTACTTTCAGGAGAGTAGTCCCGAGGATTCTTCATCAAAAGATGTTTCACCTAGTGAATCCGGCATTCATGACACTTTTCAGATACAAAATGGGTCTCAAGTGCAAGAAGAACCTCATTTTTCTAGGTTGGGCCTTGCAGATTCAGTCACGAGCTGTTCTCCATTCTTCTCAGATGTGTCAGATTCTGGGGTCAGATGTTCAGTTGGTGTATCTGATTCTGCAGCAAATTCTATGCTAGATTGTGAACGTGAAAGTGAACGTGAAAACCGGGGACCTCAATCTCAGGCTTGCTCTTCCCCAAAAGCTTTTCCTGGTAATTTCAGTGACTCATTCTCTCCAGGTGAAAGTCATGAGGTTTTCTGCACAGAAAGGACCGGAGTTTTTAAACACGAGATACCTGCTTATAGTGTAGAAGCAAGTTTCCCCAAGGCACAGTCAAACAAAATATCAATTTGTGGAGATAATTTGAATCTGAGTATGTGGATTGGTGAAAATGAGAGTCAATTCAAGCATGTGGGAGAGGATGTTGAATCTGAACATGCTTCACTCAGTTCTATTGTTGACAATGATGATGTAAATGCTGAAGACATCATTACCGGAGTTTCTGGGCAACAGGAAAATGACTCATGTACATCTTTTGAAGCATCATTTATGGATGCTGATAGATCTTTGCATGTCACTACCTCAACTGATTCTACTATTGGTCAAGGTTCCCATGTTTCCAGTGATTTCATTGACTACCATGTATCTTCAAACTGTTACCAGGGAACATATCATGGACCCTTTGTTGCTGACTCTTCTCTTGGTTTTGTGCCTAATGGTATTTATTCTCAATTGTGGCCAGATGAAGAAATGATGAATAACATTAAGGCTGAAAATGTGGAGTTAAATGCTGATATTGCATGTATGAGTAATGGCTTGCCCTCAAGCACTACTGGGTGGATGCCTTTTCAGGATAGTCAAATTATGTTAGCTGATAATGGTTATCCATCATTTCATTCTGGTAAAGTTAATGTTGATGACATGTCATCACTGTCTCTTTCAGCTTGTGCTTCATACATGTCATATGGAGACCATTACCAAAACAATTTTCACTGTGATGATGCTGAGTTCAATGTAGGCCAAGAGGTGAAAGAAACACCTGGTATTTTTTCTTCTGTAGGGTGTCAGGCTTACCAATGTTTTGAGAATGAGAATAATTTTGCAGTTATATCTGGGATATCCAATCAATATCAAGATAGCATTGGTGGAACGGCTAGTTTTCAAGGAAACTTGGACAATTTGAATTTAAAAGCTGCAGATATATCTTGGACCCATCCCCAAGCACTAATTACCAATGAGCAGCAGTTTGGTAGTGTTAAGAGCGAAGGAGGGATTCAACATAACTTTATTAATTCTCATCTTTCAAAAGGAAGAACTGAGAATTTCTATGTTGAGGAAGACCCTGATGTTTGCATTATTGAAGACATCAGTCATCCTGCTCCGACGAGTCGATCTGCAGACATTGGGAATTCCCTTAATATATCTCAATCTTCTAGATATGTTGATTCCCAGTCTTACACGGTTGGAAGTACAAGGATGAAGGCATGTGATGAACGGAATATATTACGAGTTGCATTGCAGGATCTATCTCAGCCAAAGTCAGAAGTTAGTCCACCAGAAGGATTGCTGGCAGTTCCTCTTTTAAGACATCAGAGAATTGCTTTATCATGGATGGTTCAAAAGGAAACATCAAGTTTATATTGCTCAGGAGGAATTCTTGCAGACGATCAGGGACTTGGAAAAACAGTATCAACTATTGCATTAATATTAAAGGAAAGACCTCCATTACTTAATGGGTGCACCAATGCCCGAAAAAGTGAATTGGAAACTCTGAATCTGGATGTGGATGATGACGTGCTTCCTAAGACTGGTAGAGTAAAGGAAGAATCTAATATGTGTGAGGATAATCCAAGTAGATATCCAACCAAGAGCATGAGTTTGTTGAAGCAAGACAAGGGAAGGCCATCTGCTGGGACCCTTATTGTTTGCCCCACTAGTGTCCTGCGCCAATGGGCTGAGGAGCTGCGCAGCAAGGTAAATGGTCAGGCAAGTCTCTCTGTGCTAGTATACCATGGAAGCAATCGGACAAAAGATCCTTATGAGGTGGCTAGGCATGATGTTGTCCTAACAACTTATTCCATTGTCAGCATGGAGGTTCCTAAGCAGCCTCCAGCTGACAAAGATGACGAGGAAAAGGAAATTTTTGAAGACCCTGCCACAGCAAGTAGGAAAAGAAAAAGCCCTTCCAATTCTAGTAAAAGTGGCAAGAAAAAATTGGATGGCACAATTCTTGAAGGTGTTGCTCGGCCACTTGCAAAGGTGGCATGGTTTAGGGTTGTCCTGGATGAGGCCCAGAGTATAAAGAATCACAAAACTCAAGTTGCAAGGGCCTGTTGGGGTCTTCGTGCTAAGCGCAGATGGTGCTTGTCAGGGACTCCTATCCAGAATGCAATTGATGATCTCTACAGTTACTTCAGATTTCTAAGATATGACCCTTATTCTGACTATGCATCATTTTGTACTAGAATTAAGAGCCAAATTACCAAAAACCCAGAAAATGGGTATAGAAAGTTACAAGCTGTTTTGAAGACAATAATGTTACGCCGGACCAAAGGTACACTTCTTGACGGGGAACCTATTATTTCCTTGCCGCCTAAGTATATAGAGCTGAAAAAAGTTGATTTTTCTATGGAGGAACGTGATTTCTATTCCAAACTAGAGGCTGATTCACGTGCACAGTTTCAGGAATATGCTGATGCTGGAACTGTCAAGCAAAATTATGTAAACATTTTGCTGATGCTTCTGCGCCTTAGACAAGCTTGTGATCACCCTTTGCTTGTCAAGCGATACAATTCAAACTCTCTATGGAGATCTTCGGTTGAGATGGCAAAGAAGCTTCCTCAGGAAAAACAGATCTCTCTTCTGAAATGTTTAGAGGCTTCCTTGGCCCTCTGTAGCATTTGTAATGATCCTCCTGAAGATGCAGTTGTTTCAGTTTGTGGCCATGTTTTCTGTAACCAATGCATCTGTGAACATCTTACCGGCGATGACAATCAGTGCCCTGCTGCAAATTGCAAAAGTCGACTGAGCACATCTATGGTATTTTCAAAAACCACACTGAACAGTTGTCTTTCTGACCAGAGTTGTGATAATTCACCCAGTCGCTCTGGTTCTGAAGTGGAAGAATCTGAGCCTTGGTCTGAAAGTAAGCCATATGATTCTTCAAAAATAAAGGCTGCACTTGAGGTTTTGAAGTCATTGTGTAAGCCACAGTGCTGTACACCAAAAAGTACTTCTGAGCATGGCACTTTCAGGGAAGATAATGATTGCCCTAGGAACCCCTCCATTGCTAACAATGGGAAATCCTTAAAAGATTCTCTGGAGAGTCAAAATTTGTCTGATGAGAGTAGAAGCTCTAATGGTTCAGTTACTGTTGTAGGGGAGAAAGCTATTGTGTTTTCTCAGTGGACGAGGATGCTAGATTTGCTTGAAGCGTGTCTCAAGAATTCTTCGATTAACTATAGAAGGCTTGATGGAACAATGTCAGTTGTTGCAAGAGATAAAGCTGTTAAAGATTTTAACACTTGTCCCGAGGTAACCGTGATAATTATGTCTTTGAAGGCCGCCAGTCTTGGTCTCAATTTGGTGGTAGCTTGCCATGTTCTTATGCTAGATTTATGGTGGAATCCTACAACTGAAGACCAAGCAATAGATAGAGCACATCGAATTGGGCAGACTCGTCCTGTGACTGTTTTACGGTTAACCGTGAGAGATACAGTTGAAGATCGTATCCTAGATCTGCAGCAAAAGAAGAGAACGATGGTTGCATCTGCATTTGGGGAGGATGGAACTGGTGTCATCTTGGGTGTCTTTCCGGTGACTGCTGaagaaacagaaacagaaagaaacagaaacagaaacagaaCATTTTCTAACAAAGGATTGGAAGTGTTTTTAAGTGCAATGTCGCAGGTGAAAATCGATATCACTGTTACCATTGTGTGTGTTGTGCCCGGGAGCGGGTTGTTCCAATCCAAGGTTTGA 4206 0.4123 MADADVDLSGLFTGNADEDDDMFYIDMQTVQKVLDEDDDCYFQESSPEDSSSKDVSPSESGIHDTFQIQNGSQVQEEPHFSRLGLADSVTSCSPFFSDVSDSGVRCSVGVSDSAANSMLDCERESERENRGPQSQACSSPKAFPGNFSDSFSPGESHEVFCTERTGVFKHEIPAYSVEASFPKAQSNKISICGDNLNLSMWIGENESQFKHVGEDVESEHASLSSIVDNDDVNAEDIITGVSGQQENDSCTSFEASFMDADRSLHVTTSTDSTIGQGSHVSSDFIDYHVSSNCYQGTYHGPFVADSSLGFVPNGIYSQLWPDEEMMNNIKAENVELNADIACMSNGLPSSTTGWMPFQDSQIMLADNGYPSFHSGKVNVDDMSSLSLSACASYMSYGDHYQNNFHCDDAEFNVGQEVKETPGIFSSVGCQAYQCFENENNFAVISGISNQYQDSIGGTASFQGNLDNLNLKAADISWTHPQALITNEQQFGSVKSEGGIQHNFINSHLSKGRTENFYVEEDPDVCIIEDISHPAPTSRSADIGNSLNISQSSRYVDSQSYTVGSTRMKACDERNILRVALQDLSQPKSEVSPPEGLLAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERPPLLNGCTNARKSELETLNLDVDDDVLPKTGRVKEESNMCEDNPSRYPTKSMSLLKQDKGRPSAGTLIVCPTSVLRQWAEELRSKVNGQASLSVLVYHGSNRTKDPYEVARHDVVLTTYSIVSMEVPKQPPADKDDEEKEIFEDPATASRKRKSPSNSSKSGKKKLDGTILEGVARPLAKVAWFRVVLDEAQSIKNHKTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYSDYASFCTRIKSQITKNPENGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKYIELKKVDFSMEERDFYSKLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWRSSVEMAKKLPQEKQISLLKCLEASLALCSICNDPPEDAVVSVCGHVFCNQCICEHLTGDDNQCPAANCKSRLSTSMVFSKTTLNSCLSDQSCDNSPSRSGSEVEESEPWSESKPYDSSKIKAALEVLKSLCKPQCCTPKSTSEHGTFREDNDCPRNPSIANNGKSLKDSLESQNLSDESRSSNGSVTVVGEKAIVFSQWTRMLDLLEACLKNSSINYRRLDGTMSVVARDKAVKDFNTCPEVTVIIMSLKAASLGLNLVVACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILDLQQKKRTMVASAFGEDGTGVILGVFPVTAEETETERNRNRNRTFSNKGLEVFLSAMSQVKIDITVTIVCVVPGSGLFQSKV 1401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01631 1401 MobiDBLite consensus disorder prediction 1149 1194 - -
Gma13g01631 1401 SMART ultradead3 597 900 IPR014001 -
Gma13g01631 1401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1024 1135 IPR013083 -
Gma13g01631 1401 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 616 885 IPR014001 -
Gma13g01631 1401 MobiDBLite consensus disorder prediction 776 797 - -
Gma13g01631 1401 MobiDBLite consensus disorder prediction 1166 1194 - -
Gma13g01631 1401 Gene3D - 569 661 IPR038718 -
Gma13g01631 1401 MobiDBLite consensus disorder prediction 1099 1114 - -
Gma13g01631 1401 ProSitePatterns Zinc finger RING-type signature. 1054 1063 IPR017907 -
Gma13g01631 1401 MobiDBLite consensus disorder prediction 119 150 - -
Gma13g01631 1401 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 587 923 IPR027417 -
Gma13g01631 1401 MobiDBLite consensus disorder prediction 45 63 - -
Gma13g01631 1401 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 524 1339 - -
Gma13g01631 1401 Pfam Helicase conserved C-terminal domain 1199 1298 IPR001650 -
Gma13g01631 1401 MobiDBLite consensus disorder prediction 1099 1125 - -
Gma13g01631 1401 Pfam Zinc finger, C3HC4 type (RING finger) 1039 1075 IPR018957 GO:0046872
Gma13g01631 1401 MobiDBLite consensus disorder prediction 773 812 - -
Gma13g01631 1401 Gene3D - 813 924 IPR038718 -
Gma13g01631 1401 Gene3D - 696 789 IPR038718 -
Gma13g01631 1401 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1192 1341 IPR001650 -
Gma13g01631 1401 ProSiteProfiles Zinc finger RING-type profile. 1039 1078 IPR001841 -
Gma13g01631 1401 SMART helicmild6 1215 1298 IPR001650 -
Gma13g01631 1401 SMART ring_2 1039 1077 IPR001841 -
Gma13g01631 1401 Pfam SNF2-related domain 621 1000 IPR000330 GO:0005524|GO:0140658
Gma13g01631 1401 CDD SF2_C_SNF 1201 1308 - -
Gma13g01631 1401 MobiDBLite consensus disorder prediction 131 150 - -
Gma13g01631 1401 Gene3D - 1186 1376 IPR027417 -
Gma13g01631 1401 SUPERFAMILY RING/U-box 1037 1104 - -
Gma13g01631 1401 MobiDBLite consensus disorder prediction 37 63 - -
Gma13g01631 1401 CDD DEXDc_SHPRH-like 601 923 - -
Gma13g01631 1401 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 524 1339 - -
Gma13g01631 1401 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 931 1336 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01631 Gma-Chr13 31076101 31084686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01631 524 1339 RAD5 or RAD16-like Gene Family AT1G61140 61.044 0.0 936
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gma13g01631 SNF2_N 3.2e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01631 - - gmx:100802436 2644.38