Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01594 ATGTTCGGCTTATCGTCTTCGTCTTCCTCTGCGTCCAACATGAGAGTGACCAACACGCCTGCCAGCGACCTCGCCCTCACCAACCTCGCCTTCTGTTCCCCCTCCGATCTCCGCAATTTCGCCGTCCCCGGTCACAACAACCTCTACCTCGCCGCCGTCGCCGATTCCTTCGTCTTATCTCTCTCATATCCTTCATCGCCTCCTTTTTCTCTTCAATCTATAGATACTGCTCATGACAACATAGGCAGCGGCCAGATtGCGTTGAATGTCGTTCAACGCCGGTGTGTCAAAGTTTCTTCCGGCGATTCCGTGCAAGTGAGCCGATTTGTGCCCCCTGAAGACTTCAACCTCGCACTGCTAACTCTTGATTTGGAATTTGTTAAAAAGGGGAGTAAGAGTGAACAGATTGATGCTGTTCTACTGGCTAAGCAACTTCGGAAGAGATTTATGAACCAGGTTATGACTGTGGGGCAGAAAGTATTATTTGAGTATCATGGAAATAATTATAGCTTTACTGTCAGTAATGCTGCTGTTGAGGGCCAAGAAAAGTCTAATTCTCTTGAAAGAGGGATGATTTCAGATGATACATACATTGTTTTTGAAACATCACGTGATAGTGGAATTAAGATTGTCAATCAACGTGAGGGTGCCACTAGCAACATTTTCAAGCAGAAAGAATTTAACCTTCAGTCGCTAGGTATTGGTGGCCTGAGTGCAGAATTTGCAGATATATTTCGAAGAGCTTTCGCCTCTCGTGTTTTCCCTCCCCATGTGACATCTAAATTAGGAATCAAGCATGTGAAGGGCATGCTTCTTTATGGGCCACCTGGAACTGGAAAGACACTTATGGCACGTCAAATTGGAAAAATTTTGAATGGGAAGGAACCAAAGATTGTAAATGGTCCTGAAGTTTTGAGCAAATTTGTTGGTGAAACTGAAAAGAATGTGAGAGACCTTTTTGCTGATGCTGAACAAGATCAGAGGACCCGAGGGGATGAAAGTGATTTGCATGTTATAATCTTCGATGAAATTGATGCTATTTGCAAGTCAAGAGGTTCAACTCGAGATGGTACTGGAGTTCATGATAGCATTGTAAATCAGCTTCTTACTAAGATAGATGGTGTGGAGTCACTAAATAATGTTTTACTTATTGGAATGACTAACAGAAAGGACATGCTTGATGAAGCTCTCTTAAGACCAGGGAGGTTGGAAGTCCAGGTTGAGATAAGCCTTCCTGACGAAAATGGTCGATTGCAAATTCTTCAAATTCATACTAACAAAATGAAAGAGAATTCTTTTCTAGCTGCTGATGTGAACCTTCAAGAGCTTGCTGCTCGAACGAAAAACTACAGTGGTGCAGAACTTGAAGGTGTTGTGAAAAGTGCTGTCTCATATGCTTTAAATAGACAATTGAGTCTAGAGGATCTCACTAAGCCAGTGGAGGAAGAGAACATTAAGGTTACAATGGATGACTTTTTGAATGCACTCCATGAAGTTACTTCTGCATTTGGAGCTTCAACTGATGATCTTGAAAGATGCAGACTCCATGGCATTGTGGAGTGTGGTGATCGACATAAGCACATTTATCAAAGAACAATGCTACTTGTGGAGCAAGTTAAAGTGAGTAAAGGAAGCCCACTTGTCACTTGTCTCCTTGAAGGTTCCCGTGGAAGTGGTAAAACTGCACTTTCAGCTACTGTTGGTGTTGACAGTGACTTCCCATATGTCAAGATAGTTTCAGCTGAATCAATGATTGGTCTACATGAGAGCACCAAATGTGCACAGATTATTAAGGTTTTTGAGGATGCATACAAATCACCATTGAGTGTCATCATTCTTGATGACATTGAGAGATTATTGGAGTATGTGCCCATTGGTTCTCGATTTTCAAACTTTATTTCTCAGACACTACTGGTGCTGCTTAAACGGCTTCCTCCAAAGGGGAAAAAACTCATGGTTATTGGCACAACAAGTGAACTAGATTTCTTGGAATCAATTGGATTTTGTGATACCTTCTCTGTTACTTACCATATTCCTACATTGAACACAAAGGATGCAAAGAAGGTCCTAGAACAATTGAACGTGTTTTCTGATGAAGATATTGATTCTGCTGCAGAGGCATTGAATGATATGCCTATCAGAAAGCTATACATGTTGATTGAGATGGCAGCGCAAGGGGAGCAAGGTGGATCTGCAGAAGCCATCTTTTCTGGCAAAGAGAAGATTAATATCGCTCATTTCTATGATTGCCTCCAGGATGTTGTTAGATAA 2271 0.4196 MFGLSSSSSSASNMRVTNTPASDLALTNLAFCSPSDLRNFAVPGHNNLYLAAVADSFVLSLSYPSSPPFSLQSIDTAHDNIGSGQIALNVVQRRCVKVSSGDSVQVSRFVPPEDFNLALLTLDLEFVKKGSKSEQIDAVLLAKQLRKRFMNQVMTVGQKVLFEYHGNNYSFTVSNAAVEGQEKSNSLERGMISDDTYIVFETSRDSGIKIVNQREGATSNIFKQKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKILNGKEPKIVNGPEVLSKFVGETEKNVRDLFADAEQDQRTRGDESDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAADVNLQELAARTKNYSGAELEGVVKSAVSYALNRQLSLEDLTKPVEEENIKVTMDDFLNALHEVTSAFGASTDDLERCRLHGIVECGDRHKHIYQRTMLLVEQVKVSKGSPLVTCLLEGSRGSGKTALSATVGVDSDFPYVKIVSAESMIGLHESTKCAQIIKVFEDAYKSPLSVIILDDIERLLEYVPIGSRFSNFISQTLLVLLKRLPPKGKKLMVIGTTSELDFLESIGFCDTFSVTYHIPTLNTKDAKKVLEQLNVFSDEDIDSAAEALNDMPIRKLYMLIEMAAQGEQGGSAEAIFSGKEKINIAHFYDCLQDVVR 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01594 756 Pfam Cell division protein 48 (CDC48), domain 2 135 198 IPR004201 -
Gma13g01594 756 SMART AAA_5 546 684 IPR003593 -
Gma13g01594 756 SMART AAA_5 266 413 IPR003593 -
Gma13g01594 756 ProSitePatterns AAA-protein family signature. 381 399 IPR003960 GO:0005524|GO:0016887
Gma13g01594 756 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 510 727 IPR027417 -
Gma13g01594 756 Gene3D - 412 499 - -
Gma13g01594 756 Gene3D - 8 109 - -
Gma13g01594 756 Pfam AAA+ lid domain 437 492 IPR041569 -
Gma13g01594 756 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 245 508 IPR027417 -
Gma13g01594 756 PANTHER BNAA03G50350D PROTEIN 9 40 - -
Gma13g01594 756 PANTHER BNAA03G50350D PROTEIN 80 756 - -
Gma13g01594 756 Gene3D - 112 210 - -
Gma13g01594 756 PANTHER VESICULAR-FUSION PROTEIN NSF 9 40 IPR039812 GO:0016887|GO:0035494
Gma13g01594 756 PANTHER VESICULAR-FUSION PROTEIN NSF 80 756 IPR039812 GO:0016887|GO:0035494
Gma13g01594 756 SUPERFAMILY ADC-like 13 109 IPR009010 -
Gma13g01594 756 SUPERFAMILY Cdc48 domain 2-like 112 215 IPR029067 -
Gma13g01594 756 CDD AAA 268 411 - -
Gma13g01594 756 Pfam ATPase family associated with various cellular activities (AAA) 551 664 IPR003959 GO:0005524|GO:0016887
Gma13g01594 756 Pfam ATPase family associated with various cellular activities (AAA) 270 410 IPR003959 GO:0005524|GO:0016887
Gma13g01594 756 CDD AAA 540 666 - -
Gma13g01594 756 Gene3D - 220 411 IPR027417 -
Gma13g01594 756 Gene3D - 508 679 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01594 Gma-Chr13 30677325 30688296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01594 234 485 Calmodulin-binding Proteins AT3G56690 33.071 3.50e-30 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01594 K06027 - gmx:100791847 1407.12