Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01593 ATGGCCTTTGAGGAGCACTATGTTTCTCAGGAATTGAAAACCATCCCCAGCTCCATGACAGTGACAGAAAATTTGGATGGGTGTTTTGATTGCAACATCTGCTTAGATTTTGCACATGAACCAGTGGTCACCCTTTGTGGCCACCTATACTGCTGGCCCTGCATCTACAAGTGGCTCCATGTCCAAAGTGCTTCTCTTGCACCAGATGAGCACCCACAATGCCCTGTTTGCAAAGATGACATATGCCACACCACAATGGTTCCTCTCTATGGCCGTGGCCAGGGCATAGCTCATAGTGACCATGATGGAAAGGCATCATCCTATAGAGGCAGTTGTATACCACCAAGACCACCTGCTTTGGGTGCTCAATCGCTCATTGCAACATCATCTCAAAGTGTTCCATATCGCAACACTTATCAAAATCAGCATTTATACCAAGAAGAGGATGCATCATCATCACAAATGCTGAACCCTGGTGCCACCATTTTGGCACCAGGGTTCCCCCACCTTGTGTTTGGGATGTTTGGAGAGATGTTTTATACCAGAGTCTTTGGGAACTCGGAAAATTTATACACCCACCCAAATTCTTATCACCTGGGGGAAAGTAATAATAGTCCCAGGTTGAGAAGGCAAGAGATGCAAGCAAACAAATCATTGAACAGAATTTCAATTTTTCTGTTTTGTTGTTTCCTTCTGTGTCTAATCGTTTTCTGA 714 0.4468 MAFEEHYVSQELKTIPSSMTVTENLDGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLAPDEHPQCPVCKDDICHTTMVPLYGRGQGIAHSDHDGKASSYRGSCIPPRPPALGAQSLIATSSQSVPYRNTYQNQHLYQEEDASSSQMLNPGATILAPGFPHLVFGMFGEMFYTRVFGNSENLYTHPNSYHLGESNNSPRLRRQEMQANKSLNRISIFLFCCFLLCLIVF 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01593 237 Pfam Zinc finger, C3HC4 type (RING finger) 31 77 IPR018957 GO:0046872
Gma13g01593 237 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 5 237 IPR045103 GO:0005783|GO:0006511|GO:0061630
Gma13g01593 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 104 IPR013083 -
Gma13g01593 237 SMART ring_2 31 77 IPR001841 -
Gma13g01593 237 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3 5 237 - -
Gma13g01593 237 CDD RING-HC_AtRMA_like 29 78 - -
Gma13g01593 237 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Gma13g01593 237 ProSiteProfiles Zinc finger RING-type profile. 31 78 IPR001841 -
Gma13g01593 237 SUPERFAMILY RING/U-box 23 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01593 Gma-Chr13 30671365 30674066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01593 2 223 C3H Transcription Factor Family AT4G27470 37.500 1.40e-46 153