Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01576 ATGAGGATAAGCCTTTTCCTGAGTTTCCCTCCTTCATCCCCTTCCATGGCAGCACCTTCACTCTCCTCCGCTCTCAACTCTCTCTCCTCCCCCTCCCTCTCTCTCTCCTTCTCCACCTCCTCCCGCCGCTTCTCTCTCCTCCCTCCACCCTCACACCAACCCTCCAAACCCCTCTTCCTCACCCTCAAATCCAAACCCTCCGACGACATTGACACATCGTTCTTCGACAACATCAACCCGCAAGACGACATCACATTCAATCCCCCGGAGCCCCCGGAAGGGTTCGTGGCGCCTCCCTCCTTCGACGACGGCCCTCTGGAGACCGAGGACGAAATCGCCGCCGCCTACGAGGAGCTCTACGGCCCCGGCTACAGCGGTGTCTCGGTCCTCGGCAACGACGTGTACGTGATGGACGCGAAGGTGAAGAAAGAGACCGGGTTCGGGTCCGGCGCCAAGAAGGAGAAGGTGAGGGACGGGTTCGAGGAGAGGGTGGTGCAGGTCAGGAGGGTCACCAAGGTCGTCAAGGGAGGGAAACAGCTCAGGTTCCGCGCCGTGGTCGTCGTCGGCGACAAGAAGGGTCAGGTGGGAGTCGGAGTTGGCAAGGCCAAGGAAGTCATTGCCGCGGTTCAGAAGTCCGCCGTCAATGCCAGGAGGAACATCATCAAGGTGCCCATGACTAAGTACTCCACTTTCCCCCATAGAGCTGATGGAGATTATGGAGCGGCAAAGGTGATGCTTAGACCTGCTTCTCCCGGTACTGGGGTTATTGCAGGTGGGTCTGTGAGAATTGTTCTGGAAATGGCAGGAGTTGATAATGCTTTGGGAAAGCAACTAGGGAGTAATAATGCACTCAACAATGCCAGAGCGACTGTTGCTGCTGTGCAGAAAATGAAGCAGTTTCGTGAGGTTGCTGAGGAGCGTGGGATTCCAATGGAAGAATTGTGGAAGTAA 951 0.5678 MRISLFLSFPPSSPSMAAPSLSSALNSLSSPSLSLSFSTSSRRFSLLPPPSHQPSKPLFLTLKSKPSDDIDTSFFDNINPQDDITFNPPEPPEGFVAPPSFDDGPLETEDEIAAAYEELYGPGYSGVSVLGNDVYVMDAKVKKETGFGSGAKKEKVRDGFEERVVQVRRVTKVVKGGKQLRFRAVVVVGDKKGQVGVGVGKAKEVIAAVQKSAVNARRNIIKVPMTKYSTFPHRADGDYGAAKVMLRPASPGTGVIAGGSVRIVLEMAGVDNALGKQLGSNNALNNARATVAAVQKMKQFREVAEERGIPMEELWK 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01576 316 ProSiteProfiles S5 double stranded RNA-binding domain profile. 160 223 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Gma13g01576 316 TIGRFAM rpsE_bact: ribosomal protein uS5 159 313 IPR005712 GO:0003735|GO:0006412|GO:0015935
Gma13g01576 316 ProSitePatterns Ribosomal protein S5 signature. 177 209 IPR018192 -
Gma13g01576 316 Hamap 30S ribosomal protein S5 [rpsE]. 137 313 IPR005712 GO:0003735|GO:0006412|GO:0015935
Gma13g01576 316 Pfam Ribosomal protein S5, N-terminal domain 160 224 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Gma13g01576 316 Gene3D - 226 315 IPR014721 -
Gma13g01576 316 SUPERFAMILY Ribosomal protein S5 domain 2-like 230 308 IPR020568 -
Gma13g01576 316 PANTHER 30S RIBOSOMAL PROTEIN S5, CHLOROPLASTIC 64 316 - -
Gma13g01576 316 Gene3D - 146 221 - -
Gma13g01576 316 PANTHER RIBOSOMAL S SUBUNIT 64 316 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Gma13g01576 316 Pfam Ribosomal protein S5, C-terminal domain 237 307 IPR005324 GO:0003735|GO:0005840|GO:0006412
Gma13g01576 316 SUPERFAMILY dsRNA-binding domain-like 156 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01576 Gma-Chr13 30518621 30521119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01576 160 300 Cytoplasmic Ribosomal Protein Gene Family AT2G41840 32.215 5.41e-17 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01576 K02988 - gmx:100820232 490.73