Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01572 ATGTTTGGTGGTAATAACTGTGAGAAAATGGTAGCAGTAGTCACCCCTCAAACAGCGTCTAACAAATGGACACAGACACAACAGATAGATGATCACAAGGCCCCAATGATGGGAAGAGTCATGGAAAAACCAAGCCAAGATCTTCTTCAGCAGCAACAACAAGCCCTAAAGTGCCCTCGCTGCGAGTCTTCAAACACCAAGTTCTGCTACTACAACAACTACAGCTTGTCACAGCCTAGGCACTTTTGCAAAGCCTGCAAGCGTTACTGGACAAGAGGTGGCACTCTCAGAAACGTTCCCGTTGGTGGTGGCTGCAGAAAAAACAAGCGTGTGAAGCGTCCAACAAATCACGGTGATTCTTCTTCTTCTGCTGCTAACTCTCCTTCTTCGTCCAATTCAAACCCTCCTTCACAGCCCCACATCGATAATATTATTGCCTCTAGCTCCACCACGAACCATATAAATAATATCAGCCCTTTCTTTTATGGTGGTGATGTGATGAGTAGTGTTCCTTTCCCAAGGTTTAATCTTCATTCTCAATTGAATGCTCTTGGGTTAGGTTTTTCAACTGGGGTTAGTGAGAATGGGTTTAGTACTTCAAATAACAACAGCTTTTTTTCTGCTTATAACTCTATGTTTGGTTCTTCTTCTTCCTCAACTTGTGCACCTTCAACTCCTGTTATGGCTTCCTTGCTGAGTTCAACTCTTCTGCAGCAAAAGTTAATGAGTGGTGGTGGTGGTGGTGGGGTGAAGGGTAGTAGTGATCATGATCAAGGTGGCAACACTTTCCATGGCTTGGCACCGCTACAAGGGTTGCAAGTGGAAGGGAATAATAATAATAGTAATAATATTGGCACAAAAGAAGTGAGAGGTGAGGGACAAAACAGGTTTGATTGGAGTAATAATAACAATAACAACAATGGTGGTGGTGGTTGTCAAAACCAGATGGAGCATGTGGGTTTGTCTGATCCTAATTCGCTCTATTGGAACACTGCAACGGGTTTGGGTGCTTGGAGTGATCAACCTAACAACATTGGTCCTTCAGTCACTTCTCTGATCTAG 1062 0.4379 MFGGNNCEKMVAVVTPQTASNKWTQTQQIDDHKAPMMGRVMEKPSQDLLQQQQQALKCPRCESSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPTNHGDSSSSAANSPSSSNSNPPSQPHIDNIIASSSTTNHINNISPFFYGGDVMSSVPFPRFNLHSQLNALGLGFSTGVSENGFSTSNNNSFFSAYNSMFGSSSSSTCAPSTPVMASLLSSTLLQQKLMSGGGGGGVKGSSDHDQGGNTFHGLAPLQGLQVEGNNNNSNNIGTKEVRGEGQNRFDWSNNNNNNNGGGGCQNQMEHVGLSDPNSLYWNTATGLGAWSDQPNNIGPSVTSLI 353
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01572 353 ProSitePatterns Zinc finger Dof-type signature. 58 94 IPR003851 GO:0003677|GO:0006355
Gma13g01572 353 ProSiteProfiles Zinc finger Dof-type profile. 56 110 IPR003851 GO:0003677|GO:0006355
Gma13g01572 353 MobiDBLite consensus disorder prediction 101 144 - -
Gma13g01572 353 MobiDBLite consensus disorder prediction 117 144 - -
Gma13g01572 353 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-LIKE 5 338 - -
Gma13g01572 353 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 5 338 IPR045174 GO:0003700|GO:0006355
Gma13g01572 353 Pfam Dof domain, zinc finger 54 110 IPR003851 GO:0003677|GO:0006355
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gma13g01572 Gma-Chr13 30493860 30495132 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01572 56 353 C2C2-Dof Transcription Factor Family AT1G28310 40.000 4.58e-40 142
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gma13g01572 zf-Dof 2.3e-33 No_clan
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01572 - - gmx:778105 632.869