Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01571 ATGGACACAAGCAGGTCTGAGGGAAAAAGGGTCATGAGGTACAAAGAAGAAGATGATGATAATGATGATGAAGAAGAAGAAGAGGTGGTGAGTGAGATGGGTTTTGAAGAAGATGGAAGGAGGAATAAGAGAGTAATAAGAGATCTCTATGGAAAGAGAGGGTCCAAAGGTGGAGGCTCAATAACACCTTCTTGCCAAGTGGACAATTGTGATGCTGATCTGAGTGAAGCTAAGCAGTACCACAGAAGACACAAGGTTTGTGAGTACCATGCCAAGGCTCCTTCCGTACACATGGCAGGGCTGCAACAAAGGTTTTGCCAACAATGTAGCAGATTCCATGTGCTATCAGAATTTGATGACTCAAAGAGGAGTTGTAGAACGCGGTTGGCTGGGCATAATGAGAGGCGTCGCAAATATGCAGTTGACTAG 429 0.4499 MDTSRSEGKRVMRYKEEDDDNDDEEEEEVVSEMGFEEDGRRNKRVIRDLYGKRGSKGGGSITPSCQVDNCDADLSEAKQYHRRHKVCEYHAKAPSVHMAGLQQRFCQQCSRFHVLSEFDDSKRSCRTRLAGHNERRRKYAVD 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01571 142 MobiDBLite consensus disorder prediction 18 33 - -
Gma13g01571 142 ProSiteProfiles Zinc finger SBP-type profile. 62 139 IPR004333 GO:0003677
Gma13g01571 142 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 16 138 IPR044817 GO:0003677
Gma13g01571 142 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 3 16 138 - -
Gma13g01571 142 MobiDBLite consensus disorder prediction 1 37 - -
Gma13g01571 142 PIRSF SBP 1 142 IPR017238 GO:0003677|GO:0003700|GO:0009908
Gma13g01571 142 SUPERFAMILY SBT domain 63 140 IPR036893 GO:0003677|GO:0005634
Gma13g01571 142 MobiDBLite consensus disorder prediction 1 17 - -
Gma13g01571 142 Gene3D - 55 126 IPR036893 GO:0003677|GO:0005634
Gma13g01571 142 Pfam SBP domain 65 138 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01571 Gma-Chr13 30473974 30476012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01571 56 142 SBP-box Gene Family AT2G33810 68.889 1.03e-41 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gma13g01571 SBP 8.6e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01571 - - gmx:100527199 266.929