Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01569 ATGTCACCAAAAAGGCTCCCTCACCAAACTTCAGCAAAACTTGCTCTTAGAAACAACCATGAGCAACCCCAAGACGAAGTGCAACCCGAAGAAATTGATCAAAGTTGTTTGCTGAGCGATGAGTACAAGGATGAGAACAAAGACAAAAGCTTGTCAGATGAGAGACAAGAGTTTGAGAAAAAAGTAATAGCAACACAAAGTCTCCCTCAAGAGACTCCAACAGAGATTGCTCCCAGAAATGACCACGAGCAACTCGAAGCTGAAGTGCAACCTGTAGAAGAAGTTGACTTAGATCAAAGTTATTCGATGAGTGAGGGGGACAaggatgaggatggggatgaggatggggatgaagatgaggatgaggaAGAATATGTGACTATAGATTTGGCAAATTTGAAGGAATTGCGGTGTCCTATATGCCTAGGTATTCTCCGGAAAACAAAAGCAGTTATGGAATGCATGCACCGCTTCTGTGGAAAGTGCATAGAGAAATCCATGCGTCTTAGTAACAATGAATGTCCCGTTTGTCGTGTACACTGTCCTAGCCGTCGATCACTTAGAGATGACCCAAATTTTGATAATATAATTGCTGCTATATATCCGGATATTGACAAGTATGAGGAGGAGGAGGAATTGGCAATGTATGAGAGTGAAAGGACTCATAACAAAGAGGTATGA 681 0.3891 MSPKRLPHQTSAKLALRNNHEQPQDEVQPEEIDQSCLLSDEYKDENKDKSLSDERQEFEKKVIATQSLPQETPTEIAPRNDHEQLEAEVQPVEEVDLDQSYSMSEGDKDEDGDEDGDEDEDEEEYVTIDLANLKELRCPICLGILRKTKAVMECMHRFCGKCIEKSMRLSNNECPVCRVHCPSRRSLRDDPNFDNIIAAIYPDIDKYEEEEELAMYESERTHNKEV 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01569 226 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1A-RELATED 42 226 - -
Gma13g01569 226 CDD RING-HC_RING1_like 138 178 - -
Gma13g01569 226 SMART ring_2 138 177 IPR001841 -
Gma13g01569 226 MobiDBLite consensus disorder prediction 1 18 - -
Gma13g01569 226 MobiDBLite consensus disorder prediction 107 123 - -
Gma13g01569 226 Pfam Zinc finger, C3HC4 type (RING finger) 137 177 - -
Gma13g01569 226 ProSiteProfiles Zinc finger RING-type profile. 138 178 IPR001841 -
Gma13g01569 226 MobiDBLite consensus disorder prediction 1 123 - -
Gma13g01569 226 ProSitePatterns Zinc finger RING-type signature. 154 163 IPR017907 -
Gma13g01569 226 SUPERFAMILY RING/U-box 133 212 - -
Gma13g01569 226 MobiDBLite consensus disorder prediction 36 61 - -
Gma13g01569 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 207 IPR013083 -
Gma13g01569 226 PANTHER OS11G0578200 PROTEIN 42 226 IPR044592 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01569 Gma-Chr13 30451275 30455352 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01569 136 201 C3H Transcription Factor Family AT3G23060 34.783 6.65e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01569 K10695 - gmx:102663277 222.246