Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01548 ATGACAAACCCAAAAAACCAAACAACACTCTCCATCGTCATCATAGTCTACATTCTCTTCTTCTCACTAGCAACGACGTTGGTGTCGTGTCTGAACCAAGAAGGCTTATACCTCTACCAGCTAAAACTCTCCTTAGACGACCCAGACTCAAAACTCTCCTCATGGAACTCACGAGACGCCACTCCCTGCAACTGGTACGGCGTAACCTGCGACGCCGCAACAAACACCACCGTAACGGAGTTGGACTTGTCCGACACCAACATCGGAGGCCCATTCCTCTCTAACATCTTGTGTCGTCTCCCAAACCTCGTTTCTGTGAACCTGTTCAACAACTCCATCAACGAAACCCTACCTTCAGAAATCTCCCTCTGTAAAAACCTCATCCACCTCGACCTCTCCCAGAATCTTCTCACGGGCCCACTCCCAAACACGCTCCCGCAACTTCTTAATCTCCGCTACCTCGACCTCACCGGCAACAACTTCTCCGGCCCCATCCCTGACTCATTCGGAACATTCCAGAACCTGGAAGTTCTCTCCCTCGTTTCGAATCTTCTAGAAGGCACAATCCCTTCCTCCTTAGGTAATGTGAGTACTCTGAAGATGCTGAACTTAAGCTACAACCCTTTTTTCCCCGGTCGGATCCCGCCGGAGATCGGAAACCTAACGAACCTCCAAGTTCTCTGGCTAACGCAATGCAACCTCGTCGGCGTCATTCCAACCTCCCTCGGGAGGTTGGGAAAGCTACAGGATTTGGACCTCGCGCTCAACGACCTCTACGGTTCCATCCCGAGTTCGCTCACCGAGTTAACCAGTCTGAGACAGATCGAGTTGTATAACAACTCGCTCTCCGGGGAGCTTCCGAAGGGAATGGGGAACCTCACTAACTTGAGGCTCATCGATGCTTCCATGAATCACTTGACCGGAAGGATTCCGGAGGAGCTCTGTTCTCTGCCGCTGGAGAGTCTTAACCTTTACGAGAATCGCTTCGAGGGCGAGTTGCCGGCGAGCATTGCTGATTCGCCGAATTTGTATGAATTGAGGCTCTTCGGTAACCGGCTTACCGGAAAGTTACCGGAGAATCTCGGGAGAAACTCGCCGCTCCGGTGGCTTGATGTTTCGAGCAACCAGTTCTGGGGGCCAATTCCGGCGACGCTGTGTGACAAGGGGGCGCTAGAGGAGCTTCTGGTGATTTACAATCTTTTCTCCGGGGAGATTCCGGCGAGCCTCGGCACGTGCCAGAGCTTGACACGTGTGAGGCTCGGTTTTAACAGACTCTCCGGCGAGGTTCCCGCGGGGATCTGGGGGCTGCCGCACGTGTACCTGCTCGAGCTTGTTGATAACTCGTTTTCCGGTTCCATTGCGAGGACCATTGCTGGTGCTGCGAACTTGTCGCTGTTGATTTTGTCCAAGAACAACTTCACGGGAACGATTCCCGATGAGGTTGGGTGGTTGGAGAATCTCGTCGAGTTTTCAGCTAGTGATAATAAATTCACTGGTTCGCTTCCTGATAGTATTGTGAATCTTGGGCAGCTTGGGATTCTTGATTTTCATAAAAATAAGCTCTCTGGGGAGCTTCCGAAAGGGATTCGTTCTTGGAAGAAGCTCAACGATTTGAATCTGGCGAACAATGAGATTGGTGGGAGGATTCCTGATGAGATTGGGGGTTTGTCCGTGCTGAATTTTCTGGACCTTTCTAGAAACCGGTTTTTGGGGAAAGTCCCTCACGGGTTGCAGAATCTGAAGCTGAATCAGCTCAATTTGTCTTATAACCGATTATCCGGTGAATTACCTCCTTTGTTGGCTAAGGATATGTATAGGTCTAGTTTTCTAGGGAATCCTGGGCTGTGTGGGGATTTGAAGGGGTTGTGTGATGGGAGGGGTGAGGAGAAGAGTGTGGGTTATGTTTGGCTGCTTCGAACGATTTTTGTTGTTGCCACTTTGGTTTTCCTTGTTGGTGTGGTTTGGTTTTACTTTAGGTACAAGAATTTCCAGGACTCGAAGAGGGCGATCGATAAGTCGAAATGGACGTTGATGTCGTTTCATAAGCTGGGTTTTAGTGAAGATGAGATTTTGAACTGTCTTGATGAGGATAATGTGATTGGAAGCGGATCGTCCGGGAAGGTCTACAAGGTTGTGCTTAGCAGTGGGGAGGTTGTGGCTGTGAAGAAGATATGGGGAGGGGTTAAGAAGGAGGTGGAGAGTGGGGATGTTGAGAAGGGTGGTAGGGTTCAGGACAATGCTTTTGATGCTGAGGTTGAAACTTTAGGTAAAATCAGGCATAAGAACATTGTTAAGCTGTGGTGTTGCTGTACCACTAGGGATTGCAAGCTCTTGGTTTATGAATATATGCCTAATGGAAGTCTTGGTGATTTGCTTCATAGCAGTAAGGGAGGGTTGTTGGATTGGCCAACAAGGTACAAGATAGCTGTGGATGCTGCAGAAGGCCTCTCTTATCTGCACCATGACTGTGTTCCCGCAATTGTTCATAGAGATGTGAAATCTAACAATATTCTGTTGGACGTGGACTTTGGTGCGAGGGTGGCTGATTTTGGAGTAGCTAAGGCGGTTGAAACCACGCCCAAAGGAGCTAAATCCATGTCCGTCATTGCTGGCTCTTGTGGCTATATTGCACCAGAATATGCATATACACTTAGAGTGAACGAGAAGAGCGACATATACAGTTTCGGGGTTGTCATACTCGAGTTGGTCACTGGAAAACGCCCCGTGGACCCTGAATTTGGGGAGAAAGACTTGGTTAAGTGGGTGTGCACAACCTTGGACCAGAAAGGCGTGGACCATTTAATTGATCCAAGGCTTGATACTTGTTTCAAAGAAGAGATTTGCAAGGTCTTCAACATTGGACTCATGTGCACTAGTCCTCTTCCTATCCACCGGCCTTCAATGAGAAGAGTGGTAAAGATGTTGCAAGAGGTGGGAACAGAGAACCAAACCAAGTCTGCAAAGAAAGATGGAAAGTTATCCCCTTATTACTATGACGATGCCTCGGATCATGGAAGTGTTGTTTAA 3027 0.4889 MTNPKNQTTLSIVIIVYILFFSLATTLVSCLNQEGLYLYQLKLSLDDPDSKLSSWNSRDATPCNWYGVTCDAATNTTVTELDLSDTNIGGPFLSNILCRLPNLVSVNLFNNSINETLPSEISLCKNLIHLDLSQNLLTGPLPNTLPQLLNLRYLDLTGNNFSGPIPDSFGTFQNLEVLSLVSNLLEGTIPSSLGNVSTLKMLNLSYNPFFPGRIPPEIGNLTNLQVLWLTQCNLVGVIPTSLGRLGKLQDLDLALNDLYGSIPSSLTELTSLRQIELYNNSLSGELPKGMGNLTNLRLIDASMNHLTGRIPEELCSLPLESLNLYENRFEGELPASIADSPNLYELRLFGNRLTGKLPENLGRNSPLRWLDVSSNQFWGPIPATLCDKGALEELLVIYNLFSGEIPASLGTCQSLTRVRLGFNRLSGEVPAGIWGLPHVYLLELVDNSFSGSIARTIAGAANLSLLILSKNNFTGTIPDEVGWLENLVEFSASDNKFTGSLPDSIVNLGQLGILDFHKNKLSGELPKGIRSWKKLNDLNLANNEIGGRIPDEIGGLSVLNFLDLSRNRFLGKVPHGLQNLKLNQLNLSYNRLSGELPPLLAKDMYRSSFLGNPGLCGDLKGLCDGRGEEKSVGYVWLLRTIFVVATLVFLVGVVWFYFRYKNFQDSKRAIDKSKWTLMSFHKLGFSEDEILNCLDEDNVIGSGSSGKVYKVVLSSGEVVAVKKIWGGVKKEVESGDVEKGGRVQDNAFDAEVETLGKIRHKNIVKLWCCCTTRDCKLLVYEYMPNGSLGDLLHSSKGGLLDWPTRYKIAVDAAEGLSYLHHDCVPAIVHRDVKSNNILLDVDFGARVADFGVAKAVETTPKGAKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGKRPVDPEFGEKDLVKWVCTTLDQKGVDHLIDPRLDTCFKEEICKVFNIGLMCTSPLPIHRPSMRRVVKMLQEVGTENQTKSAKKDGKLSPYYYDDASDHGSVV 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01548 1008 Pfam Leucine Rich Repeat 150 170 IPR001611 GO:0005515
Gma13g01548 1008 Pfam Leucine Rich Repeat 126 146 IPR001611 GO:0005515
Gma13g01548 1008 ProSiteProfiles Protein kinase domain profile. 694 978 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g01548 1008 Gene3D Ribonuclease Inhibitor 340 625 IPR032675 -
Gma13g01548 1008 SMART LRR_typ_2 100 124 IPR003591 -
Gma13g01548 1008 SMART LRR_typ_2 221 245 IPR003591 -
Gma13g01548 1008 SMART LRR_typ_2 172 196 IPR003591 -
Gma13g01548 1008 SMART LRR_typ_2 148 171 IPR003591 -
Gma13g01548 1008 SMART LRR_typ_2 556 579 IPR003591 -
Gma13g01548 1008 SMART LRR_typ_2 269 293 IPR003591 -
Gma13g01548 1008 SMART LRR_typ_2 508 532 IPR003591 -
Gma13g01548 1008 SUPERFAMILY L domain-like 391 616 - -
Gma13g01548 1008 ProSitePatterns Serine/Threonine protein kinases active-site signature. 827 839 IPR008271 GO:0004672|GO:0006468
Gma13g01548 1008 Gene3D Transferase(Phosphotransferase) domain 1 783 1002 - -
Gma13g01548 1008 Gene3D Ribonuclease Inhibitor 190 339 IPR032675 -
Gma13g01548 1008 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Gma13g01548 1008 SUPERFAMILY RNI-like 80 427 - -
Gma13g01548 1008 SUPERFAMILY Protein kinase-like (PK-like) 688 975 IPR011009 -
Gma13g01548 1008 SMART serkin_6 694 997 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g01548 1008 Gene3D Ribonuclease Inhibitor 31 189 IPR032675 -
Gma13g01548 1008 Gene3D Phosphorylase Kinase; domain 1 678 782 - -
Gma13g01548 1008 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
Gma13g01548 1008 ProSitePatterns Protein kinases ATP-binding region signature. 700 723 IPR017441 GO:0005524
Gma13g01548 1008 Pfam Protein kinase domain 696 915 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g01548 1008 PANTHER LRR RECEPTOR-LIKE KINASE 10 990 - -
Gma13g01548 1008 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 10 990 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01548 Gma-Chr13 30264705 30268390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01548 28 1008 Receptor kinase-like Gene Family AT1G28440 71.631 0.0 1433
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gma13g01548 Pkinase 4.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01548 - - gmx:100819887 1855.88