Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01540 ATGGCTGGTCTCATCGATCTCAACAACGCCACCGAGGACGATGAAACGCCGTCGTCTGGctcctcctcctcctcctcctcctccACCGTCTGCCTTGAACTCTGGCACGCTTGCGCGGGTCCAATGATTTCATTGCCCAAGAAAGGGAGCGTTGTCGTGTACTTCCCTCAGGGACACTTGGAGCAACACCTCCACGATTTTCCGCTCCCTGCCTCTGCCAACATCCCTTCCCATGTCTTCTGTCGCGTCCTCGATGTCAAGCTTCATGCTGAGGAAGGGAGTGATGAAGTTTATTGCCAGGTGGTGCTGGTTCCCGAAAGTGAGCAAGTGCAGCAGAAGTTGCGGGAGGGGGAATTTGATGCTGATGGTGAAGAGGAAGATGCTGAAGCTGTGATGAAGTCGACGACGCCCCACATGTTCTGCAAGACTTTGACTGCTTCTGATACCAGCACTCATGGTGGATTCTCTGTGCCTCGTCGCGCCGCGGAAGATTGCTTCCCTCCCCTGGATTACAGTCAACAGAGGCCTTCACAGGAGCTTGTGGCAAAGGATCTCCATGGCCAGGAATGGAGGTTTCGACATATATATAGGGGGCAGCCGCGAAGACACCTGCTTACTACTGGTTGGAGTGCCTTTGTGAACAAGAAGAAACTTGTATCTGGAGATGCTGTTCTGTTTCTCAGGGGTGAGGATGGAGAACTGAGATTGGGAATTCGTAGGGCTGCTCAACTGAAAAGTGGCAGTACCTTTTCAGCTCTTTCTGGCCAGCAAGGGAGTCCTACCAGTCTTATGGATGTGGTTAATGCTTTGTCTGCAAGATGTGCCTTTAGCATTCACTATAATCCGAGGGTCAGTTCATCTGAGTTCATCATACCTATCCACAGATTCGTAAAGAGCCTTGATTATTCTTATTCAGCTGGAATGAGGTTCAGGATGCGCTTTGAAACTGAGGATGCTGCAGAGCGAAGATTCACAGGATTAATTGTTGGAATTGCTGATGTGGATCCTGTTAGATGGCCTGGATCTAGATGGAGATGCCTAATGGTAAGGTGGGATGACTTAGAAGCCACAAGGCATAATAGGGTTTCCCCATGGGAGATTGAGCCATCTGGTTCTGCTTCTACTGCAAATAACTTGATGTCAGCTGGTTTGAAGAGGACCAAGATTGGATTGCCTTCAGCCAAGCTAGATTTTCCAGTTTCCAATGCGATTGGAACATCAGACTTTGGGGAATCACTAAGATTCCAGAAGGTCTTGCAAGGTCAAGAAATACTTCCTAGCCAACCATATGGAAGGGCCCTGTCTGTTGACGAGGCTTGTGGAAATGGTCGCTTTGGACTTTTTGATGGTTTCCAGGCGATGAGATCCAGAAATGGATGGTCTTCCCATGTGAGCAACAATTCCTCACATTTGCATCCTCCTGTTCCATCTGGGCAAGTTTCATCTCCGTCATCTGTGTTCATGTTCCAGCAAGCTGTCAATCCAGTTTTAAACTCGGATTATAACAACCAAATAGGTCAGGTGATGGGAGATAAAGTCCATCAGCGAGTTTCATATGCGTCTGAAGTTAAAGGCGGAAAATTTGTATCAACCCCCTATGAGCCTCTTCTCCGTGGACTATCTCAGGAAGGCACAAATTCTTTTGGTCTTTCAAACTTTCATAATCAGCTGGATAGTTCACGTTCACACGATTCTGTTTCAGTACTGAGAGCTAGTCAAGAGTTGGTTCCCTCGTGTAAAAGTAGATGCAGAGTCTTTGGATTTTCATTAACTGAGGGTGCTCCCGTTGCAAGTAAAGAGGCGACTGACTCATCTGCAGTTGCTTGTGCTGGACCTTCCTTTACAAGACATGTTGAAGATGATTTCCATCCAGGGCATTCACTTAGGAGCAAGGCAGTGGCAAGTTATTGCACCAAGGGTGTGCTGCAATATTGA 1935 0.4718 MAGLIDLNNATEDDETPSSGSSSSSSSSTVCLELWHACAGPMISLPKKGSVVVYFPQGHLEQHLHDFPLPASANIPSHVFCRVLDVKLHAEEGSDEVYCQVVLVPESEQVQQKLREGEFDADGEEEDAEAVMKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGQEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAAQLKSGSTFSALSGQQGSPTSLMDVVNALSARCAFSIHYNPRVSSSEFIIPIHRFVKSLDYSYSAGMRFRMRFETEDAAERRFTGLIVGIADVDPVRWPGSRWRCLMVRWDDLEATRHNRVSPWEIEPSGSASTANNLMSAGLKRTKIGLPSAKLDFPVSNAIGTSDFGESLRFQKVLQGQEILPSQPYGRALSVDEACGNGRFGLFDGFQAMRSRNGWSSHVSNNSSHLHPPVPSGQVSSPSSVFMFQQAVNPVLNSDYNNQIGQVMGDKVHQRVSYASEVKGGKFVSTPYEPLLRGLSQEGTNSFGLSNFHNQLDSSRSHDSVSVLRASQELVPSCKSRCRVFGFSLTEGAPVASKEATDSSAVACAGPSFTRHVEDDFHPGHSLRSKAVASYCTKGVLQY 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01540 644 PANTHER AUXIN RESPONSE FACTOR 416 644 - -
Gma13g01540 644 Pfam Auxin response factor 267 347 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gma13g01540 644 Gene3D - 303 377 - -
Gma13g01540 644 Pfam B3 DNA binding domain 140 241 IPR003340 GO:0003677
Gma13g01540 644 ProSiteProfiles B3 DNA-binding domain profile. 140 242 IPR003340 GO:0003677
Gma13g01540 644 CDD B3_DNA 138 240 IPR003340 GO:0003677
Gma13g01540 644 SUPERFAMILY DNA-binding pseudobarrel domain 133 253 IPR015300 -
Gma13g01540 644 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 416 644 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gma13g01540 644 Gene3D - 138 242 IPR015300 -
Gma13g01540 644 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 12 425 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gma13g01540 644 MobiDBLite consensus disorder prediction 1 26 - -
Gma13g01540 644 MobiDBLite consensus disorder prediction 11 26 - -
Gma13g01540 644 PANTHER AUXIN RESPONSE FACTOR 12 425 - -
Gma13g01540 644 SMART B3_2 140 242 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01540 Gma-Chr13 30123664 30129570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01540 139 450 B3 DNA Binding Superfamily AT2G33860 63.898 1.30e-140 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gma13g01540 B3 7.6e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01540 K14486 - gmx:100808119 1143.26