Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01530 ATGTCTTCTTCCAACAGACATTGGCCAAGCATGTTCAAATCCAAGCCTTGCAATAATCCCCACAACCAATGGCATCATGACATCAACTCCTCTATAGTTTCCACCGGTTGCCAAAGAAGCCCTTATGCTAATTCAGGAGGTGACgagagaaccccagaaccaaagccaagatggaacccaaaaccggagcaaatccgcatcctggaagccatcttcaactcAGGGATGGTGAATCCCCCAAGGGATGAGATAAGGAAGATCCGGGTGCAGTTGCAAGAGTATGGCCAAGTGGGTGATGCCAATGTCTTCTACTGGTTCCAGAACCGCAAATCCAGGAGCAAGCACAAGCTTCGTCACTTCCAAAACACAAAGAACCAAAATAATGCAGAAGCACAACAACAGCACAGGGTTGATGCTTCTTCTTCTCTCTCTCAGACCACACCACTTTCATCCTCATCCTCTTCATCTGACAAATCATCTTCAAAGGAATTAGCATACAACCCCAATGGATTCTCCTTTGGCTTTTCAAATGTCAATGATGTAGCAGTGCCTAATTCTCCCACTGCTTCTGTGAATCAGACTTATTTTCACCCTCACAACCACAGTGACAACAATTTGCTACCACAAGAGCCTTTCTCCTTTACCATGCACAACAACAATGGGCAAGGTTTTGTTGATAATAATACCATAACAACGCTTGGGTTTTCTGTCCCTCAATTCTCCAGCAACATGATGCAATCTCAACTTCAGTGTCAACAAAATGTTGGATCTTGCACTAGTCTTTTGCTGAGTGAGATCATGAGTCATGGAACCTTCTCAAAGAAAGATCAAGACAAGGCATTGAAGATAATGCATCCACAACTTAGTAATTTCCCTCTTACTTCAACTCCAACCACAATCATTGCTCCTCCAATCTCAACCGTTCTGGATCCAAGCCCCATCACTCAACTTGAAGGTGTTGGTGAGGTTGCAGCAGGAGATAGGGCAAAATGTATTACAGTGTTCATTAACGATGTTGTATTTGAGATTGTGATGGGACCCTTCAACGTGCGCCAAGCCTTTGGAGATGAAGCTGTGCTTATCCACTCTTCTGGTAACCCTGTTCCCACCGATGAGTGGGGCATCACTCTCCACCCACTGCACCATGGTGCTTGTTACTATCTGGTGTGTGCATCACTCTTTATATAA 1188 0.415 MSSSNRHWPSMFKSKPCNNPHNQWHHDINSSIVSTGCQRSPYANSGGDERTPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRVQLQEYGQVGDANVFYWFQNRKSRSKHKLRHFQNTKNQNNAEAQQQHRVDASSSLSQTTPLSSSSSSSDKSSSKELAYNPNGFSFGFSNVNDVAVPNSPTASVNQTYFHPHNHSDNNLLPQEPFSFTMHNNNGQGFVDNNTITTLGFSVPQFSSNMMQSQLQCQQNVGSCTSLLLSEIMSHGTFSKKDQDKALKIMHPQLSNFPLTSTPTTIIAPPISTVLDPSPITQLEGVGEVAAGDRAKCITVFINDVVFEIVMGPFNVRQAFGDEAVLIHSSGNPVPTDEWGITLHPLHHGACYYLVCASLFI 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01530 395 SMART HOX_1 53 120 IPR001356 GO:0003677
Gma13g01530 395 ProSiteProfiles 'Homeobox' domain profile. 51 116 IPR001356 GO:0003677
Gma13g01530 395 MobiDBLite consensus disorder prediction 1 62 - -
Gma13g01530 395 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 390 - -
Gma13g01530 395 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 390 IPR044557 GO:0003700|GO:0050793
Gma13g01530 395 SUPERFAMILY Homeodomain-like 48 120 IPR009057 -
Gma13g01530 395 CDD homeodomain 54 116 IPR001356 GO:0003677
Gma13g01530 395 MobiDBLite consensus disorder prediction 124 163 - -
Gma13g01530 395 Gene3D - 55 125 - -
Gma13g01530 395 MobiDBLite consensus disorder prediction 1 45 - -
Gma13g01530 395 Pfam Homeodomain 55 115 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01530 Gma-Chr13 29986670 29988915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01530 1 389 Wox Gene Family AT5G45980 35.821 5.55e-61 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Gma13g01530 Homeodomain 3.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01530 - - gmx:100778000 764.992