Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01505 ATGATCATGGAGCTCTCGGATTCCACCGGCGGTGACCGAAACCTCAACGCGCCGCCGCCACTGCCGCCGCCGCACAACAACCACAACCAAGACGCGCGTTCCGGCCTCGGAATCGACCTAAACGAGATCCCGTCGCCTTCATCTTCGTTTCCAGAAACCCTACCGGGCTCCGTCACCGTCGACGTCGTCCGCTCATATCACGACAACCCGGCGCCGCCTCCGGGAGGTCCCGCCGCCCTCCCCCGCAGTGGCTCCTCTCCCTGCGCCGCATGCGCCAAGCCCTCCCCCGCCGCCGGCAGCCACCACCAACTCGTCGTGTGCGACGGCTGCGAGCGCGGCTTCCACCTCGCCTGCGCCGGAATTCGCGGCGGAGGCCGGCAGGCAGCGAGCCTCGACGAATGGGTCTGCGGCGAGTGCGTCGCCGCCGGAGTGAAGAGCAAGCGGTGGCCGTTGGGCGTTAAGCAGCTTCTCGATATCAATGCTCCGCCGCCGAGCGACGCCGAAGGCGACGGAGGCGACGATGAAGTGCAGGTTTCGAGAAAGCACGCTCTGGGTGATAATTCTTTTGCTGCCAATCCATTTGGTGCCCTAGTGACGAATTCAAACTTCAACAATGGGAATGCTAATGGCTTCGAAAAGGCATCTGAAGTTGTGACACATGCTGTTAGAGTCGGTTTTGAGGATATATTGAACCATACTCAGTCAATTACTAGAAGCTTTGAGGAGGCTCTTAGAGATTTTGTATCTGAACGGCGTGGTGTACTAGAGGAAGGTTGGCGAGTGGAATTTAGACAATCAGTGAGCAACTCTGAACTGTATGCAGTTTACTGTGCACCAGATGGAAAGATATTTGATTCTGTGTATGAAGTGGCTTGTTATTTGGGGCTAACGTCTGGCTACAACTCTATTGAATCTGAACTAAGGAGTGAGAGGTCTCTCCCTTCTTTAGGTGGGCCTCCATCCAGAAAAAGAAAGTCAACAAGGACTACAGTAGCCAACGGTTCTATGGAAAATCGGGGAACCTCGACGAATAGTAATTGTAAGGATCCTCCTTGTGATGGTTTAAATGTGGAATGTGCTAGTGCTAGGGGAAATATCCCAAAACCCTCTGAAATTGGAAGAAAAGAGGATTGCCACTCCTGCTCTCAACAATCTGCTGATGGACTTCCTCTACAGTTCAAGGACTTCTTTGTTCTTTCTTTGGGGAAAGTTGATGGGAGACCTTCATATTATGATGTTAATCTTATCTATCCTGTAGGTTATAAATCTTGTTGGCATGACAAGATCACTGGCTCTCTTTTTACATGTGAAGTTTTGGAAGGTGGTGATTCTGGACCTATATTTAGGATCCGAAGGTGTTCCTGTTCTGAATTTCCTGTTCCAGTTGGGTCAACCATACTCTCAATGTCAAAACTTTGTCAAGTTGTGAGTCAAACCAATGAAGGTGAGAGAAAAACTAATGCTAATATGGATTTAGATTATGATGAAGGTCTCCAAATGATGCTTTTAGACTCTTGTTTGCCAACGGAAAATGATATCCTAAGTTGCTTCCCAAGCTGCTCGATTGAGTCACGTGATATGTCAGATGTATTACACCCTATTACTAGTTCAGTTCAAGATAATGCTAGCAATTCATTAGCTGATAACTTGGGGTTTAATGGCCTTGGCGAAATTTTGGTGGAAGAGCGGTCGTCATTCTCTGCGTGGAGAGTTATTTCTCAAAAGCTAGTTAATGCTTGCAAGGATATCTTAAAACTGAAAGGAACTCTCAAGTTCTATTGTAACCATGTTGATAAGTGGGATTTAAGGAATGGAAAAAGTGATACATACTGTACTTCGTTGGATAAATTTTGTGGTTCTCTTGGTTCAGTTGGCATCCCAGATGTAATTTATTCAGACAATGATCTGGAAGGTATCTACGTGGCATTGGGAAAATGGTTGGAGCAGGATAGATTTGGATTAGATGTTGAATTTGTGCAAGAAGTATTGGAACAGCTTCCTAGTGTCCAAGACTCTTTGCAGTATGAACTTTTAAATAATAGAAATAATAGCTCGTCATTGCCAACAGTTGAAAATGGTTTCTTAGTGGTTGAATGGAGAGATGGATCAAAATATCAGGAAGAAGCAGTTCAAGCTTTATATGGAAGGTCCAAGAAGGTGACTGAAAAAAGTATTAAGGAAAGTTGTCATCCACCACTTGGGAAGCCATTATGCTCTAGGGCTCCTGGTGAGCTCATTGGTGACATTTTTCAGGCTTGGGAGCTTTTAAAGCGATTTCATGAAATTCTGGACCTGAAAGAACCATTGACATTAGATGAACTTGAGAAAGAACTCATTAACCCCTGGTTTGATGGATCAAATTTTCTTGAGAAATCTGAGAGGGACATGGATGAAAGTCAAGTTTTTATTTCCCTAGGAGCTGATGGTAATGGTAGACCATTATTATCCCCAAGATGTGAAGTTGATCCATCAGTTTCCATAGAAAGTTCTCATGCATTTATTCATGTGGAAACAGAAGCAATGAAAGAGACAGCTCAAGTTAAGCTTGCCTCTTTCACATATGCCAGATGCTTCGGTGTAGCTTTGACCAAGGCTCATAAATCGTTGCTAAGAGTTCTAATAGGTGAATTGCTGTCAAAGGTGGCTGCCCTGGTAGATCCAAATTCTGAACCTGGAGAATCACGAACAAGACGGGGAAGAAGGAAAGATATGGATAGTGCAGTTCCTGCTAAACGAACCAAGCTCAATATGCTTCCTATTAATGAATTGACTTGGCCAGAATTAGCTCGTAGGTATATGTTGGCTTTTTTGTCAATGGATGGTAACCTTGAGTCTGCAGAAATTACTGCTCGCGAGAGTGCTAAAGTATTTCGTTGCTTACGTGGTGATGGTGGTTTGCTGTGTGGTTCTCTTACTGGTGTGGCTGGGATGGAAGCAGATGCACAGCTGCTTGCAGAGGCTACAAAGACAATTTTTGGTTCTTTAAGCAGAGAAAATGACATACTAACCATGGAAGAAGAAGAGTCTAATGCAAAGGGTGCTCCTGAAATTTTTTTGGCAAATGATGGTAATGTTCCTGAATGGGCACAGATGCTAGAACCTGTCAGAAAGCTACCAACAAATGTAGGCACCCGAATCAGAAAGTGTGTTTATGAGGCTCTGGAAAAGAATCCACCAGAATGGGCAAGGGAAATACTGGAGCATTCAATCAGTAAGGAAGTGTACAAGGGCAATGCTTCTGGACCAACAAAGAAAGCAGTTCTTTCAGTGTTGGTTAAAGTTGGTGGTGAAGGATTGCAATCGAATCCCAATAAAAGCCAGAAAAAGAAAATTGTTATATCAATTTCTGACATTATCATGAAACAATGTCGCATTGTATTACGTCGTGCCGCTGCTGCAGATGATTCAAAGGTTTTTTGCAATTTGTTGGGAAGAAAATTAATAAATTCTTCAGATAATGATGATGAGGGGCTTCTTGGATCTCCAGCCATGGTAGCCCGTCCTCTTGACTTCCGCACTATTGACCTAAGATTAGCTACTGGAGCTTATGGTGGATCTCATGAAGCTTTTCTGGAGGATGTCCGCGAGCTGTGGAACAATGTCCGTGTTGCTTTTGGGGATCAACCTGATTTAGTTGAGCTGGCTGAAAAACTGACCCAAAACTTTGAATCATTATATAATGAGGAGGTTGTCACCTATGTCCAAAGATTTGTGGAATATGCTAAACTGGAATGCTTAAGTGCAGAAATGAGAAAGGAAGTTGGTGATTTTATTGAGTCAACAAATGAGATTCCGAAGGCCCCTTGGGATGAGGGAGTATGTAAAGTATGTGGCATTGATAGGGATGATGATAGTGTTCTACTATGTGATACTTGTGATGCTGAGTATCATACATATTGCTTGAATCCTCCACTTGCGAGGATCCCTGAGGGAAACTGGTACTGTCCTTCTTGTGTTGTTGGTAAACATGCAACTCAAAATGTTACAGAACGTACACAGGTTATTGGCAAACGGCAAAGTAAAAAATTCCAGGGAGAAGTCAATTCTCTTTACTTAGAATCTCTAGCTCATTTATCTGCTGCAATTGAAGAAAAAGAATACTGGGAGTACAGTGTGGGCGAGAGAACTTTCCTTCTCAAGTTTTTATGCGATGAGTTGCTTAATTCTTCCCTGATACACCAGCACCTTGAGCAATGTGCAGAGTTGTCTGCAGAGTTACATCAGAAATTGCGTGCACACTCTGCAGAGTGGAAAAGTCTGAAAACTAGAGAGGATATTTTATCCACAAAAGCTGCCAAAATTGATACTTTCTCACTAAATACTGCTGGAGAAGTTGGTCTTAAGGAAGGGTTTGCTTCTTTGTTATCAAATACTGGTAAATGTCTGGTCCAGCCACATACTGCAGTTGACAATCCTAGTAATTTTGGGGTATTTGTTGATAGTCTGCCTTCAGAAGAGGTTACCAAAGATAAGTATAGGTTTGATAGTGTTGATAAAAGCATATCTGTGACAAATTCAGATTCTGATAGCCAAAATATGAATTCCATAGATGTAGAGGGGCAATTTAGAAATGTCTCTGGCGCTGTGGAGTCTCAATGTACAGACAAATCCCCCAAGTCTTTTCCATTGCCAAATCATATGCCTCAAGAAACAAATGGTGCTGGTGGAGCATCTCTTGTTCAGGGTAAAAACCAGAAATGTGAGGGAAAGGACATACCTACTCCTGTGTCTTACCAGCAAGGAATGCCTGTTGATGTTCCTCAGATTTCTGTGAATGAGTCCGAACCCTACCACCTTGAGCTCATTGCCATCAAACGTGATATTTCGCTATTGCAGGACTCCATAACTAGTGTAGCATCACAGCTGCTGAAGCTCTCTGTTCGCCGGGAATGTTTGGGTATTGATTCCATTGGTCGATTGTACTGGGCTTCGGCTTTGCCCGGAGGACGTTCACGTATAGTTGTTGATGCAAGTGCTGCTTTGCTGCATGGAAGAGGAATGACATTTAGCAGAGACTATGTGGAGAAGTTTTCTGTTCTGCAGCATTGTGCACTATCTGACAAGGATTCCTCTTTAATGTCTCAGCCTAGTAATCCTTTGGGCAATAGTTCTCCGTGGATTGCTTATGAAACTGATGTTGAAATTGAAGAGCTCTTAGGTTGGCTGGATGATAGTGACCCTAAAGAAAGAGAACTGAAAGATTCCATTATGCTGGGGCCAAAATCAAGATTCCAACAGTTTATTAATGCACAGACTGAAGATCGGGCCAAGGACCAAGGAAATGTTTCTATGCCAAGAAACAGAGAGAAAACAGTATCTAATTCTCTTGTTACCAAGGCAACTTCCTTGCTGGAAAAGAAATTTGGTCCCTTTGTTGAGTGGGATAATAGTGAAGTGTTAAAGAAGCAAAATAGAAAGACCAGAACAACTAATGATGAAAAGTTGTATAGGTGTGAGTGCCTAGAACCCATATTGCCTTCTAGGAAACACTGCACACATTGTCACAAAACTGTTGCGAGTGACATTGAATTTGATGGGCACAATGATGGCAAGTGTAATGCAGGTCTTCTGGCCATAGAGAAGAATAAGGATAAAAATGGATCTTCTAAAGGAAGAGGGAACTTAAAATGTGATACCTTACATGAAAAATTCAGAGCTGATGCGGAAACAGCTTTGACCTCGGTTAGTGGATCTTCTAAGCTTAGCTCAAGATTGATTAAATTTTCAAATGAAGAATCCACATGCCCATTTAATTTTGAAGATATATGTTCCAAGTTTGTGACAAATGATTCTAACAAGGAACTTGTCAGCGAAATAGGTCTTATTGGTTCAGATGGTATCCCATCCTTTGTTCCTTCTGTATCTCCTTTTGTTAGTGAATATACACTCTCAGCTCAAAAGGATGAAAGCATTGTTGGTGGTGTGTCCATAGTGTCAGAAAGCCGGGTTTCTCAGGGAAACACTGATGGAGCTGGCACATGCCTTGACCATAAATCTGGCATTTCTACTGGAAAATTGGCTGCAAATGAAAGCAATAAATCCAACAAATCATCCTTGAGAGAACAAAGAGATGGAAAATTCTCTTTTTGTAGTCCTGCTTCAGTTATGGGAGCCGATGGGTGCTGTGTGGTTCCTTCGCCTTCATTGAGACCACTAGTTGGAAAAGCTTCTCACATTTTGAGGCAGCTGAAGATAAATCTACTTGACATGGATGCTGCACTCCTGGCAATTGCTCTTAGACCATCAAAGGCTGTGCCAGACAGAAGACAGGCTTGGCGTACATTTGTAAAATCTGCAAAGACTATATATGAGATGATTCAGGCAACATTTACACTGGAGGATATGATTAAGACAGAGTACTTGAGGAATGACTGGTGGTACTGGTCATCATTCTCAGCAGCTGCCAAATCTTCTACTTTGCCTTCCCTTGCCCTTCGCATATACTCCCTTGATTTAGCCATTATATATGAGAAGATGCCCAATTCAAGCTTTACTGACAGCTCTGAACCTTCTGTCATAGCGGAACCAAAACCACTGATGAATGTGGACACAGAAAAATCCAAAGCAAGCCGGAAGTCAACCAGGAAAAGGAAGGAATCAGATAGTTGA 6609 0.4317 MIMELSDSTGGDRNLNAPPPLPPPHNNHNQDARSGLGIDLNEIPSPSSSFPETLPGSVTVDVVRSYHDNPAPPPGGPAALPRSGSSPCAACAKPSPAAGSHHQLVVCDGCERGFHLACAGIRGGGRQAASLDEWVCGECVAAGVKSKRWPLGVKQLLDINAPPPSDAEGDGGDDEVQVSRKHALGDNSFAANPFGALVTNSNFNNGNANGFEKASEVVTHAVRVGFEDILNHTQSITRSFEEALRDFVSERRGVLEEGWRVEFRQSVSNSELYAVYCAPDGKIFDSVYEVACYLGLTSGYNSIESELRSERSLPSLGGPPSRKRKSTRTTVANGSMENRGTSTNSNCKDPPCDGLNVECASARGNIPKPSEIGRKEDCHSCSQQSADGLPLQFKDFFVLSLGKVDGRPSYYDVNLIYPVGYKSCWHDKITGSLFTCEVLEGGDSGPIFRIRRCSCSEFPVPVGSTILSMSKLCQVVSQTNEGERKTNANMDLDYDEGLQMMLLDSCLPTENDILSCFPSCSIESRDMSDVLHPITSSVQDNASNSLADNLGFNGLGEILVEERSSFSAWRVISQKLVNACKDILKLKGTLKFYCNHVDKWDLRNGKSDTYCTSLDKFCGSLGSVGIPDVIYSDNDLEGIYVALGKWLEQDRFGLDVEFVQEVLEQLPSVQDSLQYELLNNRNNSSSLPTVENGFLVVEWRDGSKYQEEAVQALYGRSKKVTEKSIKESCHPPLGKPLCSRAPGELIGDIFQAWELLKRFHEILDLKEPLTLDELEKELINPWFDGSNFLEKSERDMDESQVFISLGADGNGRPLLSPRCEVDPSVSIESSHAFIHVETEAMKETAQVKLASFTYARCFGVALTKAHKSLLRVLIGELLSKVAALVDPNSEPGESRTRRGRRKDMDSAVPAKRTKLNMLPINELTWPELARRYMLAFLSMDGNLESAEITARESAKVFRCLRGDGGLLCGSLTGVAGMEADAQLLAEATKTIFGSLSRENDILTMEEEESNAKGAPEIFLANDGNVPEWAQMLEPVRKLPTNVGTRIRKCVYEALEKNPPEWAREILEHSISKEVYKGNASGPTKKAVLSVLVKVGGEGLQSNPNKSQKKKIVISISDIIMKQCRIVLRRAAAADDSKVFCNLLGRKLINSSDNDDEGLLGSPAMVARPLDFRTIDLRLATGAYGGSHEAFLEDVRELWNNVRVAFGDQPDLVELAEKLTQNFESLYNEEVVTYVQRFVEYAKLECLSAEMRKEVGDFIESTNEIPKAPWDEGVCKVCGIDRDDDSVLLCDTCDAEYHTYCLNPPLARIPEGNWYCPSCVVGKHATQNVTERTQVIGKRQSKKFQGEVNSLYLESLAHLSAAIEEKEYWEYSVGERTFLLKFLCDELLNSSLIHQHLEQCAELSAELHQKLRAHSAEWKSLKTREDILSTKAAKIDTFSLNTAGEVGLKEGFASLLSNTGKCLVQPHTAVDNPSNFGVFVDSLPSEEVTKDKYRFDSVDKSISVTNSDSDSQNMNSIDVEGQFRNVSGAVESQCTDKSPKSFPLPNHMPQETNGAGGASLVQGKNQKCEGKDIPTPVSYQQGMPVDVPQISVNESEPYHLELIAIKRDISLLQDSITSVASQLLKLSVRRECLGIDSIGRLYWASALPGGRSRIVVDASAALLHGRGMTFSRDYVEKFSVLQHCALSDKDSSLMSQPSNPLGNSSPWIAYETDVEIEELLGWLDDSDPKERELKDSIMLGPKSRFQQFINAQTEDRAKDQGNVSMPRNREKTVSNSLVTKATSLLEKKFGPFVEWDNSEVLKKQNRKTRTTNDEKLYRCECLEPILPSRKHCTHCHKTVASDIEFDGHNDGKCNAGLLAIEKNKDKNGSSKGRGNLKCDTLHEKFRADAETALTSVSGSSKLSSRLIKFSNEESTCPFNFEDICSKFVTNDSNKELVSEIGLIGSDGIPSFVPSVSPFVSEYTLSAQKDESIVGGVSIVSESRVSQGNTDGAGTCLDHKSGISTGKLAANESNKSNKSSLREQRDGKFSFCSPASVMGADGCCVVPSPSLRPLVGKASHILRQLKINLLDMDAALLAIALRPSKAVPDRRQAWRTFVKSAKTIYEMIQATFTLEDMIKTEYLRNDWWYWSSFSAAAKSSTLPSLALRIYSLDLAIIYEKMPNSSFTDSSEPSVIAEPKPLMNVDTEKSKASRKSTRKRKESDS 2202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01505 2202 Pfam PHD-finger 1273 1319 IPR019787 -
Gma13g01505 2202 Pfam PHD-finger 88 140 IPR019787 -
Gma13g01505 2202 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 9 33 2201 - -
Gma13g01505 2202 ProSitePatterns Zinc finger PHD-type signature. 88 139 IPR019786 -
Gma13g01505 2202 Pfam Methyl-CpG binding domain 247 299 IPR001739 GO:0003677
Gma13g01505 2202 Gene3D - 1115 1236 IPR036427 GO:0005515
Gma13g01505 2202 CDD Bromodomain 1119 1226 - -
Gma13g01505 2202 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1353 1397 IPR028942 -
Gma13g01505 2202 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 145 IPR013083 -
Gma13g01505 2202 SUPERFAMILY DNA-binding domain 245 299 IPR016177 GO:0003677
Gma13g01505 2202 MobiDBLite consensus disorder prediction 886 906 - -
Gma13g01505 2202 MobiDBLite consensus disorder prediction 1753 1773 - -
Gma13g01505 2202 ProSiteProfiles Zinc finger PHD-type profile. 1271 1321 IPR019787 -
Gma13g01505 2202 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 245 312 IPR001739 GO:0003677
Gma13g01505 2202 ProSiteProfiles Bromodomain profile. 1164 1212 IPR001487 GO:0005515
Gma13g01505 2202 CDD PHD1_Lid2p_like 1273 1318 - -
Gma13g01505 2202 MobiDBLite consensus disorder prediction 308 349 - -
Gma13g01505 2202 MobiDBLite consensus disorder prediction 2181 2202 - -
Gma13g01505 2202 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1273 1320 IPR013083 -
Gma13g01505 2202 SMART PHD_3 1273 1319 IPR001965 -
Gma13g01505 2202 SMART PHD_3 87 140 IPR001965 -
Gma13g01505 2202 Gene3D - 389 501 - -
Gma13g01505 2202 MobiDBLite consensus disorder prediction 891 906 - -
Gma13g01505 2202 MobiDBLite consensus disorder prediction 1 94 - -
Gma13g01505 2202 MobiDBLite consensus disorder prediction 41 55 - -
Gma13g01505 2202 MobiDBLite consensus disorder prediction 2162 2202 - -
Gma13g01505 2202 Pfam Bromodomain 1162 1217 IPR001487 GO:0005515
Gma13g01505 2202 ProSiteProfiles Zinc finger PHD-type profile. 85 142 IPR019787 -
Gma13g01505 2202 ProSiteProfiles FYR domain FYRN motif profile. 388 441 IPR003888 GO:0005634
Gma13g01505 2202 PANTHER OS02G0192300 PROTEIN 33 2201 - -
Gma13g01505 2202 SUPERFAMILY FYVE/PHD zinc finger 86 141 IPR011011 -
Gma13g01505 2202 CDD PHD_SF 88 139 - -
Gma13g01505 2202 ProSitePatterns Zinc finger PHD-type signature. 1274 1318 IPR019786 -
Gma13g01505 2202 SUPERFAMILY FYVE/PHD zinc finger 1260 1323 IPR011011 -
Gma13g01505 2202 SUPERFAMILY Bromodomain 1108 1228 IPR036427 GO:0005515
Gma13g01505 2202 MobiDBLite consensus disorder prediction 322 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01505 Gma-Chr13 29709336 29723090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01505 30 2199 C2H2 Transcription Factor Family AT3G01460 45.410 0.0 1728
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gma13g01505 Bromodomain 5.8e-05 No_clan