Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01504 ATGGAGTCTGGACGGATTTTCTTTGATGCCTCTGCTTCTCGCGGGAACAACATGCTCTTCCTCGGCAACACTGAACTTGCTTTTCGAGCAGGGagatcgatgatgagcatggaggaagcctcaaagaggcgacctttcttcacctcaccggacgaactgtatgatgaggagtattatgacaagcagtcgccggagaagaagaagcACCGCCTCAGTTCCGAACAGGTCCATCTGTTGGAGAAGAACTTCGAGGAAGAGAACAAATTGGAGCCTGAGAGGAAGACCCAGTTGGCTAAGAAGCTGGGATTGCAGCCCAGGCAGGTGGCTGTGTGGTTTCAGAACCGCAGGGCTCGATGGAAGACCAAGCAACTTGAAAGGGATTATGATGTTCTCAAGTCTTCATACGACACCCTACTTTCATCCTACGATTCAATTATGAAGGAGAATGAGAAACTCAAATCTGAGGTGGTATCCTTAAATGAGAAGCTTCAAGTTCAAGCTAAAGAGGTGCCTGAGGAAACATTATGTGACAAGAAAGTCGATCCACTTCCAGTAGATGAAGATATGGCTCCGATTTTCAGCACAAGAGTGGAGGACCACCTGAGTAGTGGGAGTGTTGGAAGTGCGGTGGTGGATGAGGGTAGTCCACAGGTGGTTGTTGACAGTGTTGATTCATACTTTCCAGCTGACAACTATGGTGGATGCATGGGCCCGGTCGAAAGGGTTCAGTCTGAACAGGAGGATGGGAGTGATGATGGGAGGAGTTACTTGGATGTGTTTGTGGCATCTGAAACTGAGAATCAAAACCATGAGGAAGGAGAGGCATTGGGTTGGTGGACTAATATGTATTATGTTGGGTAA 861 0.4158 MESGRIFFDASASRGNNMLFLGNTELAFRAGRSMMSMEEASKRRPFFTSPDELYDEEYYDKQSPEKKKHRLSSEQVHLLEKNFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKSSYDTLLSSYDSIMKENEKLKSEVVSLNEKLQVQAKEVPEETLCDKKVDPLPVDEDMAPIFSTRVEDHLSSGSVGSAVVDEGSPQVVVDSVDSYFPADNYGGCMGPVERVQSEQEDGSDDGRSYLDVFVASETENQNHEEGEALGWWTNMYYVG 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01504 286 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 259 IPR045224 GO:0003700
Gma13g01504 286 SUPERFAMILY Homeodomain-like 50 124 IPR009057 -
Gma13g01504 286 Pfam Homeodomain 66 120 IPR001356 GO:0003677
Gma13g01504 286 CDD homeodomain 66 123 IPR001356 GO:0003677
Gma13g01504 286 ProSiteProfiles 'Homeobox' domain profile. 62 122 IPR001356 GO:0003677
Gma13g01504 286 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5 1 259 - -
Gma13g01504 286 Gene3D - 49 127 - -
Gma13g01504 286 Pfam Homeobox associated leucine zipper 122 164 IPR003106 GO:0006355|GO:0043565
Gma13g01504 286 Coils Coil 142 169 - -
Gma13g01504 286 SMART HOX_1 64 126 IPR001356 GO:0003677
Gma13g01504 286 ProSitePatterns 'Homeobox' domain signature. 97 120 IPR017970 GO:0000981|GO:0006355
Gma13g01504 286 PRINTS Lambda-repressor HTH signature 93 102 IPR000047 GO:0003677
Gma13g01504 286 PRINTS Lambda-repressor HTH signature 102 118 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01504 Gma-Chr13 29705236 29708116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01504 1 279 Homeobox Transcription Factor Family AT3G01470 57.394 9.00e-98 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gma13g01504 Homeodomain 1.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01504 K09338 - gmx:100797836 564.688