Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01488 ATGCCCTCGTCTTATGCCTCGCCCTGTGTCCCTCCACGACTCCGCCGTGGCGCTAGACCACGTGGCGGTGGCCGTGGTGGTTTTTCTCGCCCCCGCGATCCCTCTTCCCGGCTCCTCCCTGCAGACGAAGCACGAAACGGTGACGCTATTAACTTCGAGGCGTACGAGTCTGTACCGGTGGAGGCTAGTGGGAAGGACGTGCCTGCGCCGGTGAACACCTTCAATGAAGCGGACTTGGACGAAGGCTTGAAGAGGAACATCGAGCGTTGCAAGTACGTGAAGCCCACGCCAGTTCAGCGCCACGCGATTCCCATCGTGAGTGCGGGACGCGACCTTATGGCGTGCGCACAGACTGGTTCGGGCAAAACGGCTGCGTTTTGCTTCCCCATTATATCTGGGATTTTGAAGGGTCGTTATCGTTCTGGGTTTTCATCAATTCCATCTCCTGGTGCCGCTATTGCATACCCCGCCGCACTTATTCTTTCTCCTACCAGGGAGTTATCATGCCAGATACGCGACGAAGCCAATAAATTCGCGTATCAAACTGGAGTGAAGGTTGTGGTTGCCTATGGTGGGGCTCCTATTACTCAGCAGctgcgccttttGAAGAAAGGTGTTGATATATTGGTTGCGACTCCTGGGCGTTTGGTGGATATTATTGAAAGAGAAAGGGTTTCGTTGACAAAGATAAAGTATCTTGCTTTGGATGAGGCTGATCGTATGTTGGACATGGGTTTTGAGCATCAAATACGTAAGATTGTGGAGCAAATGCATATGCCCCCGCCAGGTATTAGACAGACATTGTTGTTTAGTGCCACGTTTCCTAATGGTATACAGAAGCTAGCATCGGACTTTTTATCCAACTACATATTCCTGTCTGTTGGAAGGGTTGGATCGAGTACTGAACTGATTGTGCAGAAGATTGAGCCTGTACAGGATATGGACAAAAGGGACCATCTTATTAAACATCTACGACGTCAAAGTGTGCATGGGTTCAATGGGAAGCATGCTTTGACTCTTGTATTTGTTGAAACTAAGAGAGGAGCGGATGTTTTGGAAGGTTGGTTGTTGAGAAGTGGCTTTTCAGCTGTTGCCATACATGGTGACAAAGTTCAAATGGAAAGGGAACGGGCTTTAAGATCCTTCAAATCTGGTGTGACTCCCATTTTGGTTGCAACTGATGTTGCTTCACGGGGTTTGGATATCCCGCATGTGGCTCATGTTATAAACTTTGACTTGCCCAGAGACATTGATAACTACGTACATAGAATTGGAAGAACAGGCCGTGCAGGCAAATCTGGTTTAGCTACTGCCTTCTTCAGCGATAAGAATAGCCCTATTGCAAAGTCGCTTATAGGACTCTTGCAGGAAGCAAATCAAGAAGTTCCATCTTGGCTCAACCAATATGCAGAGGGTTCATCATCTGGTGGGGGTAGTCAAGGCTATGGAGCTCAGCGTTACAGCAGTGGTGGGAGTTATGGTGGTCGTGATTTCCGAAATGTTATTGAAGCAGAGGTGGAGAATAACAACTGTTACAGTACAAATGTCAATGCAGATCATGCTGTAGAGTCTTATTACACTGCTGATGATGCCTCCTATGACATCCAAAACTCCAACATAGATTCCTCTTTTGACACTTTGAATATTGCATCTGCGGGCAGTTATAATCACACTGATTTTTGTGAGTTGAATGGAGCTGGTAGGGTTGAAGAAGATGGGCCTCTTGGTTATGCATCTATTGTTGCCACTGGATGGGACTAG 1761 0.4747 MPSSYASPCVPPRLRRGARPRGGGRGGFSRPRDPSSRLLPADEARNGDAINFEAYESVPVEASGKDVPAPVNTFNEADLDEGLKRNIERCKYVKPTPVQRHAIPIVSAGRDLMACAQTGSGKTAAFCFPIISGILKGRYRSGFSSIPSPGAAIAYPAALILSPTRELSCQIRDEANKFAYQTGVKVVVAYGGAPITQQLRLLKKGVDILVATPGRLVDIIERERVSLTKIKYLALDEADRMLDMGFEHQIRKIVEQMHMPPPGIRQTLLFSATFPNGIQKLASDFLSNYIFLSVGRVGSSTELIVQKIEPVQDMDKRDHLIKHLRRQSVHGFNGKHALTLVFVETKRGADVLEGWLLRSGFSAVAIHGDKVQMERERALRSFKSGVTPILVATDVASRGLDIPHVAHVINFDLPRDIDNYVHRIGRTGRAGKSGLATAFFSDKNSPIAKSLIGLLQEANQEVPSWLNQYAEGSSSGGGSQGYGAQRYSSGGSYGGRDFRNVIEAEVENNNCYSTNVNADHAVESYYTADDASYDIQNSNIDSSFDTLNIASAGSYNHTDFCELNGAGRVEEDGPLGYASIVATGWD 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01488 586 CDD DEADc_DDX3_DDX4 73 298 IPR044763 GO:0003724|GO:0005524
Gma13g01488 586 Pfam DEAD/DEAH box helicase 96 281 IPR011545 GO:0003676|GO:0005524
Gma13g01488 586 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 36 512 - -
Gma13g01488 586 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 37-LIKE ISOFORM X1 36 512 - -
Gma13g01488 586 Gene3D - 295 473 IPR027417 -
Gma13g01488 586 CDD SF2_C_DEAD 304 440 - -
Gma13g01488 586 MobiDBLite consensus disorder prediction 1 45 - -
Gma13g01488 586 Pfam Helicase conserved C-terminal domain 320 431 IPR001650 -
Gma13g01488 586 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 316 470 IPR001650 -
Gma13g01488 586 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 103 292 IPR014001 -
Gma13g01488 586 SMART ultradead3 91 307 IPR014001 -
Gma13g01488 586 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 72 100 IPR014014 GO:0003724
Gma13g01488 586 Gene3D - 36 294 IPR027417 -
Gma13g01488 586 SMART helicmild6 350 431 IPR001650 -
Gma13g01488 586 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 445 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01488 Gma-Chr13 29551527 29554175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01488 72 441 Eukaryotic Initiation Factors Gene Family AT3G13920 34.946 1.56e-58 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01488 K11594 - gmx:100817549 1082.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g01488 13 29551527 29554175 Gma13g01488 13 29551527 29554175 ECH
Gma17g01088 17 9330323 9332925 Gma13g01488 13 29551527 29554175 GST