Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01475 ATGGATGACTTGCTGCAGTGCACGACAGCTAGTCAACTCTTGAAATTACGTATTCCAGAACAGGGCACCGGCAAAAGGGTGATTGAGTTGGGGTCACGGCTCTCCCCCGAAGGAAATCAAAGTTCATGGGCATCAAGTTCCGGCCATTTTGCTTTTGGCTTTTACTCACAAGGTGATGGCTTTGCAGTTGGAATATGGCTGGTTAATGTTAGTCCAGCTGAAAATACTATTGTCTGGACTGCTAACCGTGACAGCCCCCCACTCTCCTCTAATTCAACGTTGCAGTTGACCAAGACTGGCCTTTTGTTTTTCCAAGATGGACGCCAAGGCCAAGTTCTCCTTTCAAATTTTGTTGACGTAACTTCTTCGGCATCTATGCTTGATTCTGGCAACTTTGTACTCTATGATGATACCCACAACACTGTTGTCTGGCAAAGCTTTGAGCATCCAACTGACACCATATTAGGAGGTCAGAATTTAAGTATAAATGCCAAACTGGTTTCTAGTGTGTCCAATTCAAGTCATTCGAGTGGACGTTTCTTTCTCCTCATGCAAGGTGATGGAAACCTCGTTGCTTACCCTGTGAACAGCCCAGAAACTGGCGGTGATGCTTACTGGGCTTCAAATACTAAAGGTTCAACATTCCAACATCTCAGTCTTAATGTCTTGGGCTTTCTCTGTCTTAGTGGTCCTGGAAATCTTCACTGTTTTTTTAACCATAGCATTAGCCCTGGAATGAAATTACAGAACAAAACTTCAATCTACCGTTCAACTGTTGATGTAGACGGGAACTTGAGATTGTACGAGCACCAATTAGAGGGCAATGGTAGCTCACATGTCCAAGTACTGTGGAGCACCCCACTTAAGAAATGTGAAACCAAGGGGTTTTGTGGCTTCAACAGTTACTGCTCCATCGTAACAGGTCATGCCATGTGCGAATGTTTTCCTGGTTTCGTCCCATCCAAAAGCAACGGTAGCGTGTCTCTAGATTGCGTACTGGCCCATAGCAAGGGTAGTTGCAAAAGCAGCGAAGATGCAATGATTTCGTATAAAATTACTATGTTGGAGAATATGTCTTTTAGTGATAGTGATGATCCATATTGGGTTAGCCAGATGAAGAAGGAGGAGTGCGAGAAGTCTTTCCTGGAAGATTGTGATTGCATGGCAGTATTATATTTGAACGGTAATTGCAGAAAATACAGACTTCCGCTAACATATGGAAGAACGATTCAAAATCAAGTGGCCGTGGCCCTCTTCAAGGTGCCTTCAGGAATTGTGGATAGTTCAACTCCAAACAACTCCACACTCAAGCCTAGGATCATCGTCGATAACAAGAAAAGACTGGTAATGGTTCTTGCCATTACTTTGGGTTGCTTTTTATTGTTATCTTTGGCCTTGGCAGGGTTCATTTTCCTCATTTATAAGCGGAAAGTTTACAAGTACACAAAGTTGTTTAAGAGTGAGAATCTGGGATTTACTAAAGAATGTTCTTTGCATCCGTTTTCTTTTGATGAACTTGAAATATCCACTCGAAGCTTCACAGAGGAGATAGAGAGAGGGTCCTTTGGAGCGGTTTATAGAGGCACAATTGGTGACACTAACACAAGTATCGCCGTCAAGAGATTAGAGACAATTGCTGATGAAGGGGAGAGGGAATTTCGAACtgaaattactgccattgctcgaacacatcataagaatttgAAGGATGCACCAATATCAGTAAAATTTGACATTTACAGTTTTGGGATGGTACTACTGGAGATTGTCTGCCGCAGACGCAGCATAGAAATGAATGTTTCCTCAGTGGAGGAGATACATCTTTCCAGCTGGGTATATCAATGCTTTGCAGCAGGGCAATTAAATAAGCTTGTTAAAGAAGATGAAAGTACTGTAGATTGGAGGATACTGGAAAGAATGGTGAAGGTGGGGTTGTGGTGTGTGCAAGACAGTCCACCTCTTCGTCCTTCAATCAAGAACGTCATCTTGATGTTGGAAGGATTGAAAGATATTCCAATTCCTCCCCCTCCAGCCGAGACCTCCTTAAATAAATATTCTTAG 2061 0.4216 MDDLLQCTTASQLLKLRIPEQGTGKRVIELGSRLSPEGNQSSWASSSGHFAFGFYSQGDGFAVGIWLVNVSPAENTIVWTANRDSPPLSSNSTLQLTKTGLLFFQDGRQGQVLLSNFVDVTSSASMLDSGNFVLYDDTHNTVVWQSFEHPTDTILGGQNLSINAKLVSSVSNSSHSSGRFFLLMQGDGNLVAYPVNSPETGGDAYWASNTKGSTFQHLSLNVLGFLCLSGPGNLHCFFNHSISPGMKLQNKTSIYRSTVDVDGNLRLYEHQLEGNGSSHVQVLWSTPLKKCETKGFCGFNSYCSIVTGHAMCECFPGFVPSKSNGSVSLDCVLAHSKGSCKSSEDAMISYKITMLENMSFSDSDDPYWVSQMKKEECEKSFLEDCDCMAVLYLNGNCRKYRLPLTYGRTIQNQVAVALFKVPSGIVDSSTPNNSTLKPRIIVDNKKRLVMVLAITLGCFLLLSLALAGFIFLIYKRKVYKYTKLFKSENLGFTKECSLHPFSFDELEISTRSFTEEIERGSFGAVYRGTIGDTNTSIAVKRLETIADEGEREFRTEITAIARTHHKNLKDAPISVKFDIYSFGMVLLEIVCRRRSIEMNVSSVEEIHLSSWVYQCFAAGQLNKLVKEDESTVDWRILERMVKVGLWCVQDSPPLRPSIKNVILMLEGLKDIPIPPPPAETSLNKYS 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01475 686 CDD B_lectin 45 150 IPR001480 -
Gma13g01475 686 Gene3D - 151 295 - -
Gma13g01475 686 Pfam S-locus glycoprotein domain 246 321 IPR000858 GO:0048544
Gma13g01475 686 Gene3D Phosphorylase Kinase; domain 1 497 569 - -
Gma13g01475 686 SUPERFAMILY alpha-D-mannose-specific plant lectins 172 270 IPR036426 -
Gma13g01475 686 PANTHER S-RECEPTOR KINASE-LIKE PROTEIN 569 682 - -
Gma13g01475 686 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 210 IPR036426 -
Gma13g01475 686 Gene3D Transferase(Phosphotransferase) domain 1 570 670 - -
Gma13g01475 686 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 569 682 - -
Gma13g01475 686 Pfam D-mannose binding lectin 76 166 IPR001480 -
Gma13g01475 686 SMART blect_4 34 150 IPR001480 -
Gma13g01475 686 Gene3D - 26 149 IPR036426 -
Gma13g01475 686 PANTHER S-RECEPTOR KINASE-LIKE PROTEIN 17 568 - -
Gma13g01475 686 SUPERFAMILY Protein kinase-like (PK-like) 501 676 IPR011009 -
Gma13g01475 686 ProSiteProfiles Bulb-type lectin domain profile. 25 147 IPR001480 -
Gma13g01475 686 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 17 568 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01475 Gma-Chr13 29471854 29474426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01475 578 672 Receptor kinase-like Gene Family AT4G29050 32.653 2.84e-11 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Gma13g01475 B_lectin 1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01475 - - ahf:112707637 503.442