Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01473 ATGGTGCAATCAAAGAAGTTTAGAGGTGTCAGGCAGCGCCATTGGGGTTCCTGGGTATCCGAAATTCGCCACCCACTTCTgaagagaagggtgtggctaGGGACATTTGAAACAGCAGAAGAGGCTGCTAGAGCCTATGATCAAGCTGCGATTCTGATGAGTGGGAGAAATGCCAAGACCAATTTCCCAATAACCCAAACTCCAGAAGGTGATCCAAAGAGCACTAACAGCGAGGACACTCCCTCCACCACCTCGAAGGATCTGGAGGAAATCTTACATGCAAAGCTTCGCAAATGTAGCAAGGTGCCTTCACCTTCTATGACTTGTTTGAGGCTTGACACAGAGAACTCACACATCGGAGTGTGGCAAAAGCGTGCTGGGAGGCGTTCTGATTCAAATTGGGTCATGACGGTTCAGCTGGGAAAGAAAACTGTTAATAATAATGAGACTCATCAAGCTGATAGTAGCAGTAGTAGTTCTCTTTCTTCTTCTCTACCTTCTTCTCAACATCACCACCATGAGTCTCCATCATTGAGTGTGGCAGGTAATCTTCATCACCATCAAGAAGTCGTGAGAGGAGAGATTGATGAAGAGGAGAGAATTGCCCTTCAGATGATAGAGGAGCTCCTCAACGACAGAAACTGCCCTAGCCCATCATTTGACAACAACATTCAAGAAAGGGATGGTGCTGATCATCATGACAACTTTTTTCTTTAA 717 0.4463 MVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPITQTPEGDPKSTNSEDTPSTTSKDLEEILHAKLRKCSKVPSPSMTCLRLDTENSHIGVWQKRAGRRSDSNWVMTVQLGKKTVNNNETHQADSSSSSSLSSSLPSSQHHHHESPSLSVAGNLHHHQEVVRGEIDEEERIALQMIEELLNDRNCPSPSFDNNIQERDGADHHDNFFL 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01473 238 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Gma13g01473 238 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Gma13g01473 238 MobiDBLite consensus disorder prediction 60 86 - -
Gma13g01473 238 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Gma13g01473 238 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Gma13g01473 238 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Gma13g01473 238 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Gma13g01473 238 MobiDBLite consensus disorder prediction 144 183 - -
Gma13g01473 238 MobiDBLite consensus disorder prediction 144 176 - -
Gma13g01473 238 MobiDBLite consensus disorder prediction 60 82 - -
Gma13g01473 238 MobiDBLite consensus disorder prediction 212 238 - -
Gma13g01473 238 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Gma13g01473 238 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Gma13g01473 238 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 223 - -
Gma13g01473 238 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 1 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01473 Gma-Chr13 29454981 29455962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01473 1 211 AP2-EREBP Transcription Factor Family AT1G15360 58.065 1.52e-75 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma13g01473 AP2 1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01473 - - gmx:100814893 459.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g01473 13 29454981 29455962 Gma17g02005 17 35934514 35935730 ECH
Gma13g01473 13 29454981 29455962 Gma04g00623 04 5704312 5705021 ECH
Gma13g01473 13 29454981 29455962 Gma06g00610 06 5527397 5528684 ECH
Gma13g01473 13 29454981 29455962 Gma13g01473 13 29454981 29455962 ECH
Gma17g01076 17 9245148 9246073 Gma13g01473 13 29454981 29455962 GST
Gma13g01473 13 29454981 29455962 Gma04g01395 04 31451807 31453931 PCT
Gma13g01473 13 29454981 29455962 Gma06g02006 06 27829240 27831231 PCT
Gma04g01395 04 31451807 31453931 Gma13g01473 13 29454981 29455962 PCT
Gma06g02006 06 27829240 27831231 Gma13g01473 13 29454981 29455962 PCT