LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma13g01466	ATGAAGAAGGTGAGGAGAAAGATCGGCAAGTATGAGGTGGGTCGAACAATTGGCGAAGGCACCTTCGCCAAGGTTAAGTTCGCAAGAAACTCGGAGACAGGGGATAGCGTGGCTATTAAAATCATGGCTAAGACCACCATTCTCCAGCACAGAATGGTTGAACAGATTAAAAGAGAGATATCCATTATGAAGATTGTCAGGAATCCTAATATAGTTAGATTACACGAGGTTTTGGCTAGCCAGACCAGGATCTACATAATCCTTGAATTTGTAATGGGAGGGGAACTATATGATAAAATTGTTCAGCAGGGAAAGCTTTCTGAAAATGAATCTAGGCGCTACTTTCAACAACTTATAGACACAGTTGATCATTGTCATAGAAAGGGTGTGTACCATAGAGACTTGAAGCCTGAAAATCTTCTTCTTGATGCTTACGGAAATTTGAAGGTTTCTGACTTTGGATTGAGTGCATTGACTAAACAGGGTGTTGACCTTCTTCACACCACTTGTGGGACCCCAAACTATGTTGCCCCTGAGGTACTCAGCAATAGAGGATATGATGGTGCAGCAGCTGATGTTTGGTCATGTGGAGTCATCCTATATGTTCTAATGGCTGGATATCTTCCTTTTGAGGAGGCAGACCTTCCAACACTGTATAGAAGGATAAATGCTGCAGAATTTGTTTGCCCATTCTGGTTTTCTGCAGACACAAAGTCATTCATACAAAAAATTCTGGATCCTAATCCTAAAACACGGGTGAAAATTGAAGAAATAAGGAAAGAGCCATGGTTCAAGAAAAACTATTTTCCTGTCAAACTCGGGGAAGACGAGCAAGTGAATTTGGATGATGTTCGAGCTGTTTTTGATGATATTGAGGACCAATATGTTGCTGAAAGGTCAGAAATTACTGAGGGAGGTCCTCTGATAATGAATGCATTTGAGATGATTGCCTTATCACAAGGGTTGAATCTTTCACCACTATTTGATAGGCTTCAGGATAATGTAAAGCGGCAAACTCGTTTTGTCTCCCGTAAACCAGCAAAAGTTATAATTTCTTCAATTGAAGCTGTTGCAGAGTCAATGGGTCTTAAGGTCCATTCTCGCAATTACAAGGTGAGGCTTGAAGGCGTTTCTGCAAACAGGGTTGGACCATTTGCTGTGGTCTTGGAGGTGTTTGAAGTTGCACCATCCCTTTTCATGGTTGATGTTCGGAGGGCCACCGGGGATACTTTTGACTACCACAAGTTTTACATGAATTTTTGTGCCAAACTAGGAAACATTATTTGGAGACCGGCAGGGACTATGCCAAATTCTAATCTGCTCAAGCAAATGACTTTATAA	1341	0.4146	MKKVRRKIGKYEVGRTIGEGTFAKVKFARNSETGDSVAIKIMAKTTILQHRMVEQIKREISIMKIVRNPNIVRLHEVLASQTRIYIILEFVMGGELYDKIVQQGKLSENESRRYFQQLIDTVDHCHRKGVYHRDLKPENLLLDAYGNLKVSDFGLSALTKQGVDLLHTTCGTPNYVAPEVLSNRGYDGAAADVWSCGVILYVLMAGYLPFEEADLPTLYRRINAAEFVCPFWFSADTKSFIQKILDPNPKTRVKIEEIRKEPWFKKNYFPVKLGEDEQVNLDDVRAVFDDIEDQYVAERSEITEGGPLIMNAFEMIALSQGLNLSPLFDRLQDNVKRQTRFVSRKPAKVIISSIEAVAESMGLKVHSRNYKVRLEGVSANRVGPFAVVLEVFEVAPSLFMVDVRRATGDTFDYHKFYMNFCAKLGNIIWRPAGTMPNSNLLKQMTL	446

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gma13g01466	446	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	130	142	IPR008271	GO:0004672\|GO:0006468
Gma13g01466	446	PANTHER	NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE	4	442	-	-
Gma13g01466	446	Gene3D	Kinase associated domain 1, KA1	308	430	-	-
Gma13g01466	446	PANTHER	-	4	442	-	-
Gma13g01466	446	Pfam	NAF domain	307	366	IPR004041	GO:0007165
Gma13g01466	446	Gene3D	Transferase(Phosphotransferase) domain 1	2	307	-	-
Gma13g01466	446	SUPERFAMILY	Protein kinase-like (PK-like)	8	299	IPR011009	-
Gma13g01466	446	ProSiteProfiles	Protein kinase domain profile.	11	264	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Gma13g01466	446	SMART	serkin_6	11	264	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Gma13g01466	446	ProSitePatterns	Protein kinases ATP-binding region signature.	17	40	IPR017441	GO:0005524

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma13g01466	Gma-Chr13	29379054	29386721	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma13g01466	1	372	CBL-interacting serine-threonine protein kinases	AT5G35410	73.387	0.0	583

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Gma13g01466		Pkinase	4.8e-70	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma13g01466	-		-	gmx:100784786	890.182

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma13g01466	13	29379054	29386721	Gma13g01466	13	29379054	29386721	ECH
	Gma17g01070	17	9180164	9187873	Gma13g01466	13	29379054	29386721	GST

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