Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01459 ATGGGTTCGTCCTCTAGTCGACTTGGGTCTCGCCCTTCTGCTTCTAGTTCTAGTCACAGGGTCAACCGCTTCAGACTATCGTCTCTTCTATGTGGCACCTCCACCTCTCGCTCCATTCATCAGATGGAAGAACATTCATCTGAACTTCAGGTTGATTCAGCTAGAGATTTTGATGGTGAAATTCTGAAAGACACTGAGGAATTGCCTTTGTCATATACAGAAGCTAGAATTAGCTCCAGTCCCCCTGCTGAAACTGTAACCTCATCTGATATGAGAACTGAGTTCCATGCTAATACTAGTGTTGAAGGTTCTTCTAGAAACGTTGCAACAAATAGTCAGAGGAGCTGCTTGGCTGAACATGAGGAGCTAGTCCCTCCTTATCAGGTAAGTGCTGGTCATAGTGGTCATGAATCATATAGTGATAGTAGCAACGCAGCTAGTACTTCATTTGTAGAACAGCAGTCTTCAGATCCAGTCTCTGTAAATGTTTCTGCTAACAAGGATGTAGTCAATGATGTTAATAATCCAGTGGTTAGTGGTGTCTCTCAAGTCTCTCACGAGACAATGCACCCAAGAAGTTCAACACCTCAAGAGCATGGGAATTTTGGTTCTGGTGAAATCTCTGTTGAGAATCACACTAGTGCATTCATATCTATCCAGAATTCTTCCAACCCTGTTGCTCAAGTTTCCAACATAGCAGCAACCTCTCAAGTGCCAGAAGATGAACCTCGTCGTGAGACAATACCTTCGGGTTTAGGTATTCTTGTGTCCAATCGGGAAAGAGGGCCAGGAAATGATAGTGTGCTTCAAGTTGATGTGGTCACCATATCTTCCAACATTTTGTCTGGAAGCAGTGCTGATGCCAATGATTATGATTCCAGAAGGAATGATAGAAGATTATTTTGGGATGCTTTTTCACGACGTAGTTCTAGAAGGCTTGGTGATTCTCCAACCATTGTCTTCTCTGCTGGGGGTGCTGATGATTCTGGATCTCAAGATCGATGGCTAGTTGATTTTGGAGGTGATTTGTCAAATGATGGGGTTGGAGCTGCTTCCGGATATATGGGTAGTAGAATTCACAGATTGAATGAACGAAGAATGCGGCACTCGAGATCTGAGATCTGGGAAAGGCTTCGTGGTGGCTTTGATGAGATTGGTCGGTGGAATTCATGTCCACTAGGAATTCATGCAGATGGCATGTGCTTCTGTGAGTCTTCGCCAATGGCTGAGGAATCTAGCACTCGAGCAAGTATTTCAAGAATAGTCATGCTGGCTGAGGCTTTGTTTGAGGTTTTAGATGAAATCCATCGGCAACCTGGCTCTCTGTCTCTATCCATGGTCTCACTCCCTGCACCTGAATCAATTGTTGATTCCCTCCCTCTGAAATCTCACAAAAAGGTTGATGGGGCTGATGTAGGCAATGATGCTGAACAATGCTACATATGTCTGGCGGATTATGAAGAAGGGGACCAAATACGAGTGCTTCCTTGCTTCCACGAGTATCACATGTCATGTGTCGATAAATGGCTTAAAGAAATACATGGTGTATGTCCTCTGTGTCGCGGCAATGTCTGTGGAGGGTCCACAGAGTCTTCTGCCAACTCGGAAGTGCAGTCTCATTGA 1623 0.4473 MGSSSSRLGSRPSASSSSHRVNRFRLSSLLCGTSTSRSIHQMEEHSSELQVDSARDFDGEILKDTEELPLSYTEARISSSPPAETVTSSDMRTEFHANTSVEGSSRNVATNSQRSCLAEHEELVPPYQVSAGHSGHESYSDSSNAASTSFVEQQSSDPVSVNVSANKDVVNDVNNPVVSGVSQVSHETMHPRSSTPQEHGNFGSGEISVENHTSAFISIQNSSNPVAQVSNIAATSQVPEDEPRRETIPSGLGILVSNRERGPGNDSVLQVDVVTISSNILSGSSADANDYDSRRNDRRLFWDAFSRRSSRRLGDSPTIVFSAGGADDSGSQDRWLVDFGGDLSNDGVGAASGYMGSRIHRLNERRMRHSRSEIWERLRGGFDEIGRWNSCPLGIHADGMCFCESSPMAEESSTRASISRIVMLAEALFEVLDEIHRQPGSLSLSMVSLPAPESIVDSLPLKSHKKVDGADVGNDAEQCYICLADYEEGDQIRVLPCFHEYHMSCVDKWLKEIHGVCPLCRGNVCGGSTESSANSEVQSH 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01459 540 Pfam Ring finger domain 478 521 IPR001841 -
Gma13g01459 540 ProSiteProfiles Zinc finger RING-type profile. 479 521 IPR001841 -
Gma13g01459 540 MobiDBLite consensus disorder prediction 133 158 - -
Gma13g01459 540 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 443 525 IPR013083 -
Gma13g01459 540 SUPERFAMILY RING/U-box 472 524 - -
Gma13g01459 540 MobiDBLite consensus disorder prediction 1 20 - -
Gma13g01459 540 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 538 - -
Gma13g01459 540 SMART ring_2 479 520 IPR001841 -
Gma13g01459 540 MobiDBLite consensus disorder prediction 128 158 - -
Gma13g01459 540 MobiDBLite consensus disorder prediction 186 207 - -
Gma13g01459 540 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01459 Gma-Chr13 29333099 29336993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01459 349 525 C3H Transcription Factor Family AT5G45290 46.392 3.99e-41 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01459 - - gmx:100783722 1022.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g01459 13 29333099 29336993 Gma13g01459 13 29333099 29336993 ECH
Gma17g00991 17 8447601 8451690 Gma13g01459 13 29333099 29336993 GST