Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01442 ATGGGAAAGAAAAAGAAGCAAGTAGGAGAAATAGGGGAGGATGGTAAAGTGGGAGATAGCAGCCCCAGAGCATATGATAATGATACTATGGTGTTTATATCCATGTCTCAAGAATTGAAGAATGAGGGGAACAAGCTGTTCCAAAAGAGGGATCTTGAAGGATCTATACTAAAGTATGAGAAAGCCCTCAAGTTGCTTCCGAGAAATCATATTGATGTGTCCTATCTACGGAGCAACATGGCTGCATGTTATATGCAGATGGGACTCAGTGAGTTCCCAAGGGCAATCCATGAATGTGATTTGGCTCTTCAAGTGACACCAAAATATAGTAAAGCTCTGTTGAAGAGGGCAAGGTGCTATGAGGCTTTAAATAGGCTGGATTTAGCTCTGAGGGATGCCAGCACTGTTGTGAAGATGGAGCCAAATAATGTCATGGCATTGGAGATCTCAGAAAAGGTGAAAAATGCGCTTGAGGAGAAAGGATTGAGAGTAAGCAATTCAGTAATTGAGTTGCCTCCAGATTATGTTGAACCTCCTAATGCTCTGCCTCCAGAAAAGGCATTGAAAGAGAAGACACGCAAGAAGAAGAGCAGTAAAGAGGAAGAGAAGGCACCTGATGGCAAAATTCCAGAAAAGCAAACTGAGGAGAAATTTGAGGACAAGAAGGCTGAGGGCAGTATTGTAGTCGTAGAGAAGAAGATCAACACGCCCAAGAAGAAGAAGGCCAAGGTAAAAGTTGATGAGAAGAAGGCTGATATTAAGGAAGTTATAGAGGAAAGAAGTAATGGTAGAAGGGAACCTGTTCCTAAGAAAACAGCTAAACTTATTTTCGGTGATGATATAAGATACGCTGAACTGCCTATTAATTGTAGTCTCTTCCAGTTAAGAGAAGTTATTCATGACCGTTTCCCAAGATTAGGAGCTGTTCTTGTCAAATACAGGGACCAAGAAGGTGATTTGGTCACAGTCACTTCTGATGATGAATTAAGATGGGCTGAAACAGGATCCAATGGTTCTATCCGACTGTACATAGTAGAAGCTACTCCTGAGCAGGATCCACTTTTTGAGAAATTTAAAGTGAAGGAGGCGGAAGTGGTTGGCATTAACATTGCACACAAGAGTGGTTGTGTGGGAAAGGCAAAGGAAATTGTTAGCTCTTCTTGCATTGAGGATTGGATAATTCAGTTTGCCAAACTGTTCAAGAACCATGTTGGGTTTGAATCTGACAGATATTTGGATTTTCATGAACTCGGGATGAACCTCTGTTCTGAGGCTTTGGAGGAGACGGTTACAAGTGAAGAAGCACAAGGTCTGTTTGACATTGCAGGAGATATGTTCCAAGAGATGACTGCTCTTGCATTGTTCAACTGGGGAAATGTGCATATGTCTAGGGCAAGGAAGAAAGTGTATGTCAAGGAAGATTCTTCTAAAGAACATCTATGTGAACAAATCAAAAGTTCATACGAGTGGGCACTGGAAGAATATGCAAAAGCGGGAGAAAAATATGAAGCAGCCATTAAAATTAAGTCAGATTTTCATGAAGGCTTCCTGGCACTAGGGCTGCAGCAGTTTGAGCAAGCAAAACTTTCTTGGTATCATGCACTTGGTTGTAATGTAGATTTGCTGACATGGCCTTCCACTGAGGTTCTTCATCTTTACAACAATGCTGAAGAAAATATGGAGAAAGGAATGCAGATATGGGAAGAATCAGAAAAGCAGAACTTGAGTAAAACATCTAGTTCAAATGATGTTAGATTGCATTTGCAGAACATGGGGTTGGATGGGCTTTTTAAAAATATATCCCTAGATGAATTTGCAGCACAGGAGGCACATATGAGGTCTCAAATAAATCTCCTATGGGGTACCATGCTATATGAACGCTCATTTGTGGAGTTCAAATTAGGGCTACCAATATGGCATGAATCTCTAGAAGTTGCAGTTGAGAAGTTTGAACTTGCTGGAGCTTCTCCAACAGATATAGCTGTAGTTTTGAAGAACCACTGTTCAAATAATACTGCAGTAGATGGTCTTGCCTTTAAAATTGATGAAATAGTACAGGCATGGAATGAGATGTACAAAGCTAAAATGTGGCAGAGTGGAGTTCCATCATTTCGTTTGGAACCCTTATTTAGAAGGCGAGTTTCAAAAACTTATCATGCCTTTGAGCTTGCATGA 2175 0.4083 MGKKKKQVGEIGEDGKVGDSSPRAYDNDTMVFISMSQELKNEGNKLFQKRDLEGSILKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEFPRAIHECDLALQVTPKYSKALLKRARCYEALNRLDLALRDASTVVKMEPNNVMALEISEKVKNALEEKGLRVSNSVIELPPDYVEPPNALPPEKALKEKTRKKKSSKEEEKAPDGKIPEKQTEEKFEDKKAEGSIVVVEKKINTPKKKKAKVKVDEKKADIKEVIEERSNGRREPVPKKTAKLIFGDDIRYAELPINCSLFQLREVIHDRFPRLGAVLVKYRDQEGDLVTVTSDDELRWAETGSNGSIRLYIVEATPEQDPLFEKFKVKEAEVVGINIAHKSGCVGKAKEIVSSSCIEDWIIQFAKLFKNHVGFESDRYLDFHELGMNLCSEALEETVTSEEAQGLFDIAGDMFQEMTALALFNWGNVHMSRARKKVYVKEDSSKEHLCEQIKSSYEWALEEYAKAGEKYEAAIKIKSDFHEGFLALGLQQFEQAKLSWYHALGCNVDLLTWPSTEVLHLYNNAEENMEKGMQIWEESEKQNLSKTSSSNDVRLHLQNMGLDGLFKNISLDEFAAQEAHMRSQINLLWGTMLYERSFVEFKLGLPIWHESLEVAVEKFELAGASPTDIAVVLKNHCSNNTAVDGLAFKIDEIVQAWNEMYKAKMWQSGVPSFRLEPLFRRRVSKTYHAFELA 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01442 724 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Gma13g01442 724 ProSiteProfiles PB1 domain profile. 270 347 IPR000270 GO:0005515
Gma13g01442 724 PANTHER PROTEIN CLMP1 3 723 IPR044517 -
Gma13g01442 724 SUPERFAMILY CAD & PB1 domains 272 356 - -
Gma13g01442 724 Gene3D Tetratricopeptide repeat domain 34 165 IPR011990 GO:0005515
Gma13g01442 724 Gene3D - 274 347 - -
Gma13g01442 724 PANTHER PROTEIN PHOX3 3 723 - -
Gma13g01442 724 SMART PB1_new 270 347 IPR000270 GO:0005515
Gma13g01442 724 SMART tpr_5 74 109 IPR019734 GO:0005515
Gma13g01442 724 SMART tpr_5 36 69 IPR019734 GO:0005515
Gma13g01442 724 SMART tpr_5 110 143 IPR019734 GO:0005515
Gma13g01442 724 ProSiteProfiles TPR repeat profile. 110 143 IPR019734 GO:0005515
Gma13g01442 724 MobiDBLite consensus disorder prediction 1 23 - -
Gma13g01442 724 MobiDBLite consensus disorder prediction 173 220 - -
Gma13g01442 724 SUPERFAMILY TPR-like 37 528 IPR011990 GO:0005515
Gma13g01442 724 CDD PB1 274 344 - -
Gma13g01442 724 Coils Coil 239 266 - -
Gma13g01442 724 MobiDBLite consensus disorder prediction 1 21 - -
Gma13g01442 724 MobiDBLite consensus disorder prediction 184 220 - -
Gma13g01442 724 Pfam PB1 domain 272 345 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01442 Gma-Chr13 29187616 29191362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01442 19 143 Calmodulin-binding Proteins AT3G25230 28.058 3.30e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01442 - - gmx:100807387 1369.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g01442 13 29187616 29191362 Gma13g01442 13 29187616 29191362 ECH
Gma17g01009 17 8598221 8600482 Gma13g01442 13 29187616 29191362 GST
Gma13g01442 13 29187616 29191362 Gma09g00848 09 12477909 12482496 PCT
Gma09g00848 09 12477909 12482496 Gma13g01442 13 29187616 29191362 PCT