Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01418 ATGATTAGCACTTCCACTTCAGTAGACAGTTTAGCAGTGGATCAATTAATCCGAGATGGTGAgactttggtttcagcaagtggaattaccgaagtgggtttcttaagtcctggcgattcaaaaagacgatacttgggtatatggtacagaaatatatcccctttaacagtggtgtgggtggctaaccgaaatacacctctccagaatacatcaggagtcctaaaactcaaccagaaagggtttcttgtgcttctcaatgctacaaacagcgccatttggtcatccaacatattaagcacggctcttgggtttgggaaattttgtaggatgaaacttggatggaatttagagactggtctagaaagatatggattatcttggaaaagtgtcgagaatcctgctgagggagactatactgtaaaaattgacctaggaggatatcctcaaatggttatattcagggtacctgatataaaaacaaggatagtgccatggaatggCTTGTCTATAGTTGGATATCCAGGTCCAAATCATCTATCGTTGCAGGAATTTGTGATCAATGAAAAAGAGGTGTATTATGAGTACGAGCTTCTTGATAGATCAGTCTTCAGCTTATATACACTGGCTCCTTCAGGTACTGGGCAGGGTTTGTTTTGGACAACTGAAATAAGCACCCGGAAAGTTGTCTCCATTGGGGAGCAAGATCAATGCGAAAATTACGCCTTTTGTGGTACAAATTCTATATGCAGTTATGAAGGAAACTATTCCACTTGTGAATGTGTGAAAGGATGTGTTCCCAAGTTCCCTCAATACTGGAATTTATCAATTTGGTCTAACGGTTGTGTTCCAAGGATCAAGTCTAATTGCAAAAACGGCTATACATATGGCTTCTTAAAGTACACACAGATGAAATTGCCAGACACATCTTCatcatggtttaataagaccatgaaactcgaggattgtcacaagttgtgtctagaaaactgttcttgtttagcatatgcaagtttagatgttcgtggtggaggaagtggctgtctactttggtttaataacctgGCTGACTTGAGGAAATTCTCTCAATGGGGACAAGACCTTTATATCAAAGTCCCTGCTTCAGATCTATATCATGTTGCAACTGGCCATGAAAACATCAAGAAAAAGATAGTAGGAATCACTGTTGGTGTGACTACTTTTGGATTAATCATCACGTGCGTGTGCATATTGATAATTAAAAATCAAAGGGCTGCAAGAAAAATTTACAACAAGCATTACAAAAGTAAACAGATAATAGAAGACATTGATTTGCCAACTTTCGCTTTGTCAGCCTtagctaatgccactgaaaacttctcaaccaaaaataagctcagagaaggtggatttggaccagtatacaagggcacacttatggatgggaaagtgttagcagtgaaaaggctttcaaagaagtcaatacaagggttggatgagttcaaaaaagaagtggcattgattgcgaaacctcagcaccgtaatcttgtaaagcttcttggttgttgcatagaaggagaagaaaaaatgctgatctatgaatacatgcccaaccaaagcttggactactttgtttttggacttctttatcttcatcaagactctaggttaaggattattcacagagatctaaaaactagcaatattttactagatgccaatttggatcccaatatatcagactttggcctggctcgatcatttttcggagatcaaGTGGCTGGAACATAtggttacatgcctcctgagtatgctgcgcgtggtcatttctcattgaagtcagatgtttttagctatggagtgattctgctagagattgtaagtgggaacaaaaacagggaatttgccgaccccgaaaattacaataatcttcttgggaatGCATGGAGATTATGGACTGAAGAGAGGACGTTGGAAATACTAGATGATGTGTTAGAAGAAAAATGCACGCCTCATGAAAGGCCTATTGTGCGTGCAACAACATGTCATTAG 2028 0.1716 MISTSTSVDSLAVDQLIRDGETLVSASGITEVGFLSPGDSKRRYLGIWYRNISPLTVVWVANRNTPLQNTSGVLKLNQKGFLVLLNATNSAIWSSNILSTALGFGKFCRMKLGWNLETGLERYGLSWKSVENPAEGDYTVKIDLGGYPQMVIFRVPDIKTRIVPWNGLSIVGYPGPNHLSLQEFVINEKEVYYEYELLDRSVFSLYTLAPSGTGQGLFWTTEISTRKVVSIGEQDQCENYAFCGTNSICSYEGNYSTCECVKGCVPKFPQYWNLSIWSNGCVPRIKSNCKNGYTYGFLKYTQMKLPDTSSSWFNKTMKLEDCHKLCLENCSCLAYASLDVRGGGSGCLLWFNNLADLRKFSQWGQDLYIKVPASDLYHVATGHENIKKKIVGITVGVTTFGLIITCVCILIIKNQRAARKIYNKHYKSKQIIEDIDLPTFALSALANATENFSTKNKLREGGFGPVYKGTLMDGKVLAVKRLSKKSIQGLDEFKKEVALIAKPQHRNLVKLLGCCIEGEEKMLIYEYMPNQSLDYFVFGLLYLHQDSRLRIIHRDLKTSNILLDANLDPNISDFGLARSFFGDQVAGTYGYMPPEYAARGHFSLKSDVFSYGVILLEIVSGNKNREFADPENYNNLLGNAWRLWTEERTLEILDDVLEEKCTPHERPIVRATTCH 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01418 675 ProSiteProfiles PAN/Apple domain profile. 289 372 IPR003609 -
Gma13g01418 675 CDD PAN_AP_plant 286 372 - -
Gma13g01418 675 ProSiteProfiles Bulb-type lectin domain profile. 8 131 IPR001480 -
Gma13g01418 675 SUPERFAMILY Protein kinase-like (PK-like) 434 662 IPR011009 -
Gma13g01418 675 Pfam Protein tyrosine and serine/threonine kinase 454 536 IPR001245 GO:0004672|GO:0006468
Gma13g01418 675 Gene3D Hepatocyte Growth Factor 288 368 - -
Gma13g01418 675 Gene3D Transferase(Phosphotransferase) domain 1 533 673 - -
Gma13g01418 675 Gene3D - 3 115 IPR036426 -
Gma13g01418 675 ProSitePatterns Serine/Threonine protein kinases active-site signature. 551 563 IPR008271 GO:0004672|GO:0006468
Gma13g01418 675 Gene3D Phosphorylase Kinase; domain 1 412 527 - -
Gma13g01418 675 CDD B_lectin 14 97 IPR001480 -
Gma13g01418 675 SMART ntp_6 292 371 IPR003609 -
Gma13g01418 675 SMART serkin_6 452 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g01418 675 SMART blect_4 14 133 IPR001480 -
Gma13g01418 675 ProSiteProfiles Protein kinase domain profile. 452 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g01418 675 Pfam S-locus glycoprotein domain 162 267 IPR000858 GO:0048544
Gma13g01418 675 Pfam PAN-like domain 294 357 IPR003609 -
Gma13g01418 675 Pfam D-mannose binding lectin 56 97 IPR001480 -
Gma13g01418 675 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 5 665 - -
Gma13g01418 675 SUPERFAMILY alpha-D-mannose-specific plant lectins 44 149 IPR036426 -
Gma13g01418 675 Pfam Protein kinase domain 539 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g01418 675 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 5 665 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01418 Gma-Chr13 28961781 28964856 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01418 384 657 Receptor kinase-like Gene Family AT4G05200 45.455 4.07e-79 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DSLV Gma13g01418 Pkinase 2.2e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01418 - - gmx:100815430 1003.82