Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01401 ATGGAGCTTCAACTGGGTCTCGCTCTCTCAACCCATTCTCGTGCCTACGACCAGCCTTTCAGCCACAAAAAACGTACCTTCTCCCAACTCATGATGATGGAACATGCACCACCACCACACCATGTTATGCTTCCTACTCTGTCTCTCCTCCCTTTAACTCCAAGCCACCATGTTGTTGATGATCACCATAGCCAATGCTCTAACATCACCAAGGATGAGGAGGAGGAGGGTGTAGTGGGTTGGCCACCAGTAAACCATTGGAGGAAGAAACTTCATGTGGAAGAGGTTGTCGGGAATAATAATAATATTGATCACATGGTATGGGTTGATCATCGTCAAACTCATAGTCTCCAAGGATATTCATCGAATACTCTGTACGTGAAGGTGAAGATGGAGGGTGTGGGGATTGCACGGAAGGTTGATCTCAGTATGCATCAATCATTTCACACGCTCAAGGAAACCTTGATGGACATGTTTGGAAAATGTCATCATCAACAATCAAACAACTATGAACTTGCTTATCTGGACAAAGAAGGTGACTGGCTTCTCGCCCAAGATGTACCATGGAGAAGTTTCGTTGGGTGTGCACGACGACTCAAATTGGTGAAGACCAGCAGATAA 621 0.4573 MELQLGLALSTHSRAYDQPFSHKKRTFSQLMMMEHAPPPHHVMLPTLSLLPLTPSHHVVDDHHSQCSNITKDEEEEGVVGWPPVNHWRKKLHVEEVVGNNNNIDHMVWVDHRQTHSLQGYSSNTLYVKVKMEGVGIARKVDLSMHQSFHTLKETLMDMFGKCHHQQSNNYELAYLDKEGDWLLAQDVPWRSFVGCARRLKLVKTSR 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01401 206 ProSiteProfiles PB1 domain profile. 124 206 IPR000270 GO:0005515
Gma13g01401 206 Gene3D - 119 206 - -
Gma13g01401 206 PANTHER AUXIN-RESPONSIVE PROTEIN IAA20 1 203 - -
Gma13g01401 206 SUPERFAMILY CAD & PB1 domains 117 201 - -
Gma13g01401 206 Pfam AUX/IAA family 21 165 IPR033389 -
Gma13g01401 206 Pfam AUX/IAA family 166 205 IPR033389 -
Gma13g01401 206 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 203 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01401 Gma-Chr13 28723243 28724527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01401 126 202 B3 DNA Binding Superfamily AT1G19850 36.250 3.07e-11 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gma13g01401 AUX_IAA 7.9e-21 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01401 K14484 - gmx:100808466 424.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g01401 13 28723243 28724527 Gma13g01401 13 28723243 28724527 ECH
Gma17g01056 17 9039237 9040246 Gma13g01401 13 28723243 28724527 GST