Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01382 ATGGCTTTCCACGACCATCTCCAGCACGAGATAGGGTTCCAGCGTTTCACGGAGGAGCAAGAGTTGAACGAGAATAGAGACATGCAACAGAGGCTCCCACCTCCGACATGGCTCAACAACGTTAACGTCAACGCGCGTCAACAGAATTTCCTCGACAGCGAGAAGAGCGTGGATCGGAACCGAAGCGAGAGCAATTGCGAATCCGAGGATTTGAGGGAATACAAAGCGGACATTCTAGGACACCCTCTCTACGATCAACTGCTATCGGCGCACGTGTCGTGCCTCAGAATCGCTACGCCCGTGGACCAGCTTCCTAGGATCGACGCCCAGCTTCAGCAGTCGCAGCGCGTGGTTGAAAAGTACTCTGCACTTGCACACAACGGGGTCGTCGATGAGAAGGAGCTTGATCAGTTCATGACCCATTATGTTCTGTTGCTCTGTGCCTTTAAAGAACAACTGCAGCAGCATGTCCGTGTTCATGCCATGGAGGCAGTGATGGCTTGTTGGGATCTGGAGCAGTCTCTGCAAAGCTTGACAGGTGTATCTCCTGGTGAAGGAACGGGTGCAACAATGTCAGACGATGAAGATGACCAGGCAGAGAGCAATGCCAACTTATACGAAGGAAGCCTTGATGGGGGTGAAACTCTTGGATTTGGTCCTCTTGTCCCCACTGAAAGTGAAAGATCTTTGATGGAGAGAGTGAGGCATGAATTGAAGCATGAACTAAAACAGGGTTACAAGGAGAAGATTGTGGACATAAGAGAAGAAATTCTACGAAAGAGACGAGCAGGGAAACTTCCAGGGGACACCACATCCCTTTTGAAAGCTTGGTGGCAGTCACATTCTAAATGGCCTTACCCCACTGAGGAAGACAAGGCTAGGTTGGTGCAGGAAACAGGCTTGCAATTAAAGCAGATAAATAATTGGTTCATAAATCAGAGGAAAAGGAACTGGCATACTAATAACCCCTCATCCTCTAGTAACTCCAAAAGCAAGCGCAAGAGTGCAGGAGAAACCAGTAACCAGAGCTTCATGTGA 1038 0.4933 MAFHDHLQHEIGFQRFTEEQELNENRDMQQRLPPPTWLNNVNVNARQQNFLDSEKSVDRNRSESNCESEDLREYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVEKYSALAHNGVVDEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGEGTGATMSDDEDDQAESNANLYEGSLDGGETLGFGPLVPTESERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNNPSSSSNSKSKRKSAGETSNQSFM 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01382 345 MobiDBLite consensus disorder prediction 179 199 - -
Gma13g01382 345 SMART KNOX1_2 72 116 IPR005540 GO:0003677|GO:0005634
Gma13g01382 345 SMART HOX_1 259 324 IPR001356 GO:0003677
Gma13g01382 345 Pfam Homeobox KN domain 277 316 IPR008422 GO:0003677|GO:0006355
Gma13g01382 345 SMART KNOX2_2 125 180 IPR005541 GO:0003677|GO:0005634
Gma13g01382 345 ProSiteProfiles 'Homeobox' domain profile. 257 320 IPR001356 GO:0003677
Gma13g01382 345 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 23 339 - -
Gma13g01382 345 CDD homeodomain 260 320 IPR001356 GO:0003677
Gma13g01382 345 MobiDBLite consensus disorder prediction 314 345 - -
Gma13g01382 345 Pfam ELK domain 237 258 IPR005539 GO:0003677
Gma13g01382 345 Pfam KNOX2 domain 130 179 IPR005541 GO:0003677|GO:0005634
Gma13g01382 345 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 23 339 - -
Gma13g01382 345 SUPERFAMILY Homeodomain-like 259 324 IPR009057 -
Gma13g01382 345 ProSiteProfiles ELK domain profile. 237 257 IPR005539 GO:0003677
Gma13g01382 345 Pfam KNOX1 domain 74 115 IPR005540 GO:0003677|GO:0005634
Gma13g01382 345 SMART ELK_2 237 258 IPR005539 GO:0003677
Gma13g01382 345 Gene3D - 258 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01382 Gma-Chr13 28516788 28526077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01382 74 342 Homeobox Transcription Factor Family AT5G11060 83.516 6.47e-164 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gma13g01382 KNOX2 3.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01382 - - gmx:100803673 699.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g01382 13 28516788 28526077 Gma13g01382 13 28516788 28526077 ECH
Gma17g00985 17 8406905 8415691 Gma13g01382 13 28516788 28526077 GST
Gma13g01382 13 28516788 28526077 Gma15g01920 15 26114477 26121224 PCT
Gma15g01920 15 26114477 26121224 Gma13g01382 13 28516788 28526077 PCT