Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01376 GTACTTTGACCCCAAGCCAAGTTTTCATTACTTAGATGATTCAGGGGGAATTTCCTGCCACATAACATTGCCTTCCAATGCACCAATAAACCAAATTTTGGGTACACCACAGTTATCTATGGAGGCTTCCAAAAGAGAAGCTTGCCTGAAAGCAATAGAAGAACTGTATAATTTGGGCGCTTTAAGTGATTGTCTCTTGCCAAAACAAGATGATGCAGAGCCTGAGGTGCAGGTTTCAGGCTCTTCTGATGAAGATGAATGTGAAGCAGATGCCATATCAAGAGGAAAATTACATGAGATGCTAGTTCCTTCTGCCTTTGGACAGTCATGGATAAATGAGGATAACATTGTCCGTCTCAACTCTTACTACATAAAATTTTGTCCCTATCCAGAGGACAGGGTCTACAAAGAGTTTGGTCTATTCATGATGACCTGTCTTCCGATGGAGGCTGAGAAATTGGAACTTGATCTCCATCTTGCTCATGGTCGATCTGTGATGACAATGTTTGTCCCATTTGGAGTTGTAGAATTTAACAAAGATGAGATTAAGATGGCAGAGAATTTTCAAGAAATGTTCCTCAAAATTATTCTTGATAGATTAGAATTCATTTCCGAGTTTGTAGACTTGGGTATGAGTGCTGAATCTCACTCAGGCACATCAACCTTCTACCTTTTGCTTCCAGTTGTATTGCAAGAATATGGAAATGCCATGGAAGTAGATTGGAAGATAGTGAAGAGATGCCTTTGTTCACCAATTTTCAGGCATCCAGCTGATACTATGGATAAAAAAGTTTTCCCTTTAGATATTCACCTGCAACTTGCCAATGGTTACAGAAGTGTAAGAAATGTCGAGAATAGTTTAGTGTATGCCCCACATAAGAAGAACTTTTATTTTGTCACGAATGTTAACTATGAAAAGAATGGATATAGTCCTCATAATGATTCAGGCACTTCAAGCTATGTGGATTACTTCATTGAAAAGTTTTCCATTCACCTCAAATGTCCGAAGCAACCACTTCTGCATGTGAAACCGGTCTCCAATTTGCACAACCTGTTACACAACAGAAAGCGTGAGGATGCAGAACCACAGGAGCTGGACGAATACTTAATTTATTTGCCTCCTGAGCTTTGTGAACTAAAAGTAATAGGTTTTTCGAAGGATATTGGCAGTTCCATATCTTTGCTGCCCTCAATTATGCATCGTCTTGGAAACTTGCTGGTGGCTATTGAACTAAAGCACATGCTATCTTCTTCCTTTCCAGAAGCAGCTGAAATTAGTGCCATTAGAGTTTTAGAGGCTCTCACCACTGAGAAGTGTCAGGAGCGCTTTTCCCTTGAAAGACTTGAAGTGCTTGGTGATGCTTTCCTTAAATTTGCTGTTGCACGTCATTTTTTTCTCATGCATGACAGCCTTCATGAAGGAGACCTTACAAAAAGGCGTTCCAATGCTGTAAATAATTCCAATTTGTTTAAGTTGGCTATTAAGCGCAATTTGCAGGTCTATATATGCGATCAGACATTTGATCCCACTCAGTTTTATGCATTGGGCCGTCCTTGCCCAAGAGTTTGTAGCAATGAAACCGAAGAAAGCATACACTTTTGTTTAAATTCTGTTATGCAACAAGGAAAAGCAACTGAAACCCGATGTAGCAAAAATCATCATTGGTTACATAGGAAAACAATTGCTGATGTGGTTGAAGCTCTGGTTGGAGCATTCCTAGTTGACAGTGGCTTTAAAGCTGCAATTGCCTTTCTTTCATGGATTGGCATACAAGTTGATTTTGAAGCTTCACAAGTGGTTGATATCTGCATAGCAAGTGCTAGCTATTCCCCTCTTTCTTCTGAAGTAGACATTCCTTCTCTTGAAGGTAAGCTAGGACATCACTTTTTTCATAAAGGCCTGCTTCTCCAGGCATTTGTACATCCTTCTTACAATAAGCTTGGAGGAGGCTGTTATCAGGCAAGTCGATTGGAGTTTCTTGGAGATGCTGTCTTGGATTATTTGATTACTTCATATCTATTCTCAGCTTATCCCAAACTAAAGCCTGGTCAATTGACAGATTTGAGATCATTGTCTGTTAACAACAAGGCATTTGCTTGTCTAGCGGTAGATCGCAGTTTTGATAATTTTCTTTTATGTGATTCAAGTGGCCTGTCTGAGGCAATAAAAAAGTATGTGGACTATGTTAGAAGACCTGTGTCAGATAATGGCATTAAAGAAGGGCCAAAATGTCCCAAGGCACTGGGTGACTTAGTGGAATCTTGTGTTGGTGCCATCCTTCTTGATTCAGGGTTCAATTTGAACAAAGTTTGGAAGATTATGACTTCATTCTTGGACCCAATCATGAAATTCTCATCAAGCTTGCAGCTCAGTCCTGTTAGGGATTTGCGAGAACTTTGCCAATCTCATAATTTGGAGTTGGAGTTTCTGCCAGTGCCCTCAAAATTGACTAAAAGGTTTTCAGTTGAAGCTAAAGTGAGTGGGAATGGTGTATGTGAAACAGCTTCAGCAACTGGCCAAAATAAAAAAGAGGCTTGCAGAATTGCTTCACAGCTACTTTTTTTAAAGTTCAAGGCTCAAGGTTGGAAAGCTAAGTCAAAAACCCTGGAAGAAGTTCTGGAATCAACTTCTAAAATGGAACCAAAACTTATTGGCTATGATGAAACTCCCATTGATGTAACAGATACCAATACTGCCAAGCACATAGTGGTTAATGCTGACCCGTACAACAACTCTAACCCAGAAATTTGCCCTATGCAACTGACAGATGAAATATGCTCTCCATGTGTGAAACCTTTCGGCCAACGGCTTCAATCTTCTGCTAAGGGAAAGCTTAGTCAAATATTTGAAAATCGTGATTGTGGCAGTGACTCGTCTGGGACAGGTAGAACAGCAAGATCACGATTGTATGAATTATGTGCTGCGTATTGCTGGAAACCTCCTTCATTTGAATGCTGCAAGAAAGAGGGACCAGACCACCTGAAACAATTTACTTGCAAGGTGACCTTAGAGATAGAAGAGGCCCAGAATTTGATTTTAGAGTTTGTTGGGGAACCTCTGTCAAAGAAGAAAGATGCAGCAGAGAGTGCGGCAGAGGGTGCATTATGGTATCTACAACATGAAGGTTTCTTGCCTAGTATTGGTAATTGA 3151 0.403 YFDPKPSFHYLDDSGGISCHITLPSNAPINQILGTPQLSMEASKREACLKAIEELYNLGALSDCLLPKQDDAEPEVQVSGSSDEDECEADAISRGKLHEMLVPSAFGQSWINEDNIVRLNSYYIKFCPYPEDRVYKEFGLFMMTCLPMEAEKLELDLHLAHGRSVMTMFVPFGVVEFNKDEIKMAENFQEMFLKIILDRLEFISEFVDLGMSAESHSGTSTFYLLLPVVLQEYGNAMEVDWKIVKRCLCSPIFRHPADTMDKKVFPLDIHLQLANGYRSVRNVENSLVYAPHKKNFYFVTNVNYEKNGYSPHNDSGTSSYVDYFIEKFSIHLKCPKQPLLHVKPVSNLHNLLHNRKREDAEPQELDEYLIYLPPELCELKVIGFSKDIGSSISLLPSIMHRLGNLLVAIELKHMLSSSFPEAAEISAIRVLEALTTEKCQERFSLERLEVLGDAFLKFAVARHFFLMHDSLHEGDLTKRRSNAVNNSNLFKLAIKRNLQVYICDQTFDPTQFYALGRPCPRVCSNETEESIHFCLNSVMQQGKATETRCSKNHHWLHRKTIADVVEALVGAFLVDSGFKAAIAFLSWIGIQVDFEASQVVDICIASASYSPLSSEVDIPSLEGKLGHHFFHKGLLLQAFVHPSYNKLGGGCYQASRLEFLGDAVLDYLITSYLFSAYPKLKPGQLTDLRSLSVNNKAFACLAVDRSFDNFLLCDSSGLSEAIKKYVDYVRRPVSDNGIKEGPKCPKALGDLVESCVGAILLDSGFNLNKVWKIMTSFLDPIMKFSSSLQLSPVRDLRELCQSHNLELEFLPVPSKLTKRFSVEAKVSGNGVCETASATGQNKKEACRIASQLLFLKFKAQGWKAKSKTLEEVLESTSKMEPKLIGYDETPIDVTDTNTAKHIVVNADPYNNSNPEICPMQLTDEICSPCVKPFGQRLQSSAKGKLSQIFENRDCGSDSSGTGRTARSRLYELCAAYCWKPPSFECCKKEGPDHLKQFTCKVTLEIEEAQNLILEFVGEPLSKKKDAAESAAEGALWYLQHEGFLPSIGN 1049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01376 1049 SUPERFAMILY RNase III domain-like 430 591 IPR036389 GO:0004525|GO:0006396
Gma13g01376 1049 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 1 75 IPR005034 GO:0016891
Gma13g01376 1049 CDD RIBOc 431 587 IPR000999 GO:0004525|GO:0006396
Gma13g01376 1049 ProSiteProfiles Ribonuclease III family domain profile. 618 764 IPR000999 GO:0004525|GO:0006396
Gma13g01376 1049 PANTHER DICER-RELATED 1 1042 - -
Gma13g01376 1049 SMART PAZ_2_a_3 259 407 IPR003100 GO:0005515
Gma13g01376 1049 Gene3D - 971 1040 - -
Gma13g01376 1049 Gene3D - 787 868 - -
Gma13g01376 1049 PANTHER DICER-LIKE PROTEIN 4 1 1042 - -
Gma13g01376 1049 Pfam Dicer dimerisation domain 1 70 - -
Gma13g01376 1049 SMART DRBM_3 792 858 IPR014720 -
Gma13g01376 1049 SMART DRBM_3 965 1039 IPR014720 -
Gma13g01376 1049 ProSiteProfiles Ribonuclease III family domain profile. 432 577 IPR000999 GO:0004525|GO:0006396
Gma13g01376 1049 SMART riboneu5 428 597 IPR000999 GO:0004525|GO:0006396
Gma13g01376 1049 SMART riboneu5 633 787 IPR000999 GO:0004525|GO:0006396
Gma13g01376 1049 CDD RIBOc 634 786 IPR000999 GO:0004525|GO:0006396
Gma13g01376 1049 Gene3D paz domain 276 379 - -
Gma13g01376 1049 CDD DSRM_EIF2AK2-like 790 857 - -
Gma13g01376 1049 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 964 1039 - -
Gma13g01376 1049 Gene3D Ribonuclease III domain 426 588 IPR036389 GO:0004525|GO:0006396
Gma13g01376 1049 Gene3D Ribonuclease III domain 613 786 IPR036389 GO:0004525|GO:0006396
Gma13g01376 1049 Pfam Ribonuclease III domain 656 764 IPR000999 GO:0004525|GO:0006396
Gma13g01376 1049 Pfam Ribonuclease III domain 446 577 IPR000999 GO:0004525|GO:0006396
Gma13g01376 1049 SUPERFAMILY RNase III domain-like 617 783 IPR036389 GO:0004525|GO:0006396
Gma13g01376 1049 SUPERFAMILY dsRNA-binding domain-like 963 1045 - -
Gma13g01376 1049 CDD DSRM_DCL_plant 971 1040 - -
Gma13g01376 1049 SUPERFAMILY PAZ domain 279 379 IPR036085 GO:0005515
Gma13g01376 1049 Pfam PAZ domain 282 402 IPR003100 GO:0005515
Gma13g01376 1049 ProSiteProfiles PAZ domain profile. 281 381 IPR003100 GO:0005515
Gma13g01376 1049 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 964 1040 IPR014720 -
Gma13g01376 1049 Gene3D Dicer dimerisation domain 1 76 IPR038248 -
Gma13g01376 1049 SUPERFAMILY dsRNA-binding domain-like 746 857 - -
Gma13g01376 1049 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 791 859 IPR014720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01376 Gma-Chr13 28422391 28445307 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01376 K11592 - gmx:100797277 2089.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g01376 13 28422391 28445307 Gma13g01376 13 28422391 28445307 ECH
Gma17g00979 17 8329020 8351155 Gma13g01376 13 28422391 28445307 GST