Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01333 ATGGCCGCTCATAGTACCAATCATATCCTTTGGTGCTTTGTTTTGGTTATTATTGTTGTCGCCCTTTACACTCCAAACATTAGTGCTGCAAAACAATCTAAAATAAATGGCTTGAATGTGATCGATCAATGTTGGAGACTGAATCCTAAATGGAGGAGGCATCGACCTCAACTAGCAACATGTTCTGTGGGCTACACTGGCAAGATGACAAACAATATTGGTAAGGACCTTATCCATTATAAAGTTATTGACCCCAATGATGATCCTATAAACCCCAAACCTGGAACCTTGAGGTATGGAGCTTCTGTAATTCAAGGTAAAGTGTGGATCACATTCCAAAGAGACATGCACATTAAACTTGAGAGACCTCTTCTTATTAGTAGTTTTACTACCATTGATGGTAGAGGTGTTAATGTCAACATTGCTGATAATGCATGCTTAATGATCTTTAAGGCAACCAACGTAATCATCCATGGCATTCGGGTTCATCATTGCAAACCTCAAGCCCCAGGAATTGTAATGGGGCCTGAAGGCAAGGTGATTCCTTTGGGCCATGTAGATGGTGATGCAATTCGATTAGTTACAGCCTCAAAGATTTGGATTGATCATAACACACTTTATAATTGTCAAGATGGTCTACTTGATGTAACGCGAGGTTCCACTGATGTAACTGTATCCAATAACTGGTTTAGAAACCAAGACAAGGTTATGCTTCTTGGGCATGATGATGGATATGTGAGAGACCAGAACATGAAGGTTACTATTGTGTACAACCACTTTGGACCGAATTGTAATCAACGCATGCCAAGGATTCGCCATGGATATGCACATGTAGCCAACAACCTTTACTTAGGATGGGTGCAATATGCCATTGGTGGAAGCATGGGACCTAGCCTCAAAAGTGAAGCTAACCTCTTTATAGCACCAACAATAGGGAGTAAAGAGGTAACATGGAGAAAGAGTACTCAAAAAAATGGAAACACATGGGAATTTCATTCAGTGAAAGATGCTTTTGAAAATGGAGCCTCCTTCACAATAACAAAAGGAGGACGTGTGCCAAAGCCAATTATAGCAAGAAACAATACTTTAAAGTTGTTGATGTCAAATTTGTGA 1113 0.4007 MAAHSTNHILWCFVLVIIVVALYTPNISAAKQSKINGLNVIDQCWRLNPKWRRHRPQLATCSVGYTGKMTNNIGKDLIHYKVIDPNDDPINPKPGTLRYGASVIQGKVWITFQRDMHIKLERPLLISSFTTIDGRGVNVNIADNACLMIFKATNVIIHGIRVHHCKPQAPGIVMGPEGKVIPLGHVDGDAIRLVTASKIWIDHNTLYNCQDGLLDVTRGSTDVTVSNNWFRNQDKVMLLGHDDGYVRDQNMKVTIVYNHFGPNCNQRMPRIRHGYAHVANNLYLGWVQYAIGGSMGPSLKSEANLFIAPTIGSKEVTWRKSTQKNGNTWEFHSVKDAFENGASFTITKGGRVPKPIIARNNTLKLLMSNL 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01333 370 SUPERFAMILY Pectin lyase-like 36 353 IPR011050 -
Gma13g01333 370 SMART amb_all 115 312 IPR002022 -
Gma13g01333 370 Pfam Pectate lyase 126 306 IPR002022 -
Gma13g01333 370 Gene3D - 38 367 IPR012334 -
Gma13g01333 370 PRINTS Pollen allergen Amb family signature 86 111 IPR018082 -
Gma13g01333 370 PRINTS Pollen allergen Amb family signature 123 139 IPR018082 -
Gma13g01333 370 PRINTS Pollen allergen Amb family signature 187 208 IPR018082 -
Gma13g01333 370 PRINTS Pollen allergen Amb family signature 267 286 IPR018082 -
Gma13g01333 370 PRINTS Pollen allergen Amb family signature 289 308 IPR018082 -
Gma13g01333 370 PRINTS Pollen allergen Amb family signature 329 353 IPR018082 -
Gma13g01333 370 PANTHER PECTATE LYASE 3 365 - -
Gma13g01333 370 PANTHER PECTATE LYASE 18-RELATED 3 365 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01333 Gma-Chr13 27862569 27864064 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01333 69 316 Polysaccharide Lyase AT5G09280 72.581 1.77e-143 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01333 K01728 - gmx:100780437 691.804