Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01311 ATGGACTTGCAGTTGAAGCAATGGAGTAACCGGCATGAGTCAGAACAAGAACATTATTCCCCAAACATGCCAAAATTTCTCCCTCAACACCACCCACCACCATCTCCCTCTGCACTCCCTCTCTTTGTACCTGAACAACCCAACACCAAAGTCTGCACCCTGTCAGCATTTTCTGATTCCACACTACCTTCTGCTCCCAGATTTTCCAGGATGGAGAGTTGCTTCAGCTTTGCACAGTGGCAAGAGCTTGAGTTGCAGGCTCTGATATTCAGGTACATGCTGGCCGGTGCTCCTGTTCCTCCTGAGCTCCTTCTACCAATCAAGAAAAGCTTCCTTCAACTTTATAACCCTCCTTTGTTGGAATCAGGGTACTACTGGGGAAGAGCAGCGCTGgatccggagccggggcggtgccggaggaccgacggcaagaagtggcggtgctcgaaggacgcggtggcgggtcagaagtactgcgaccgccacatgcatcgtggccgaaaccgttcaagaaagcctgtggaaCAACGTGATGGATCTCTTTCTGCTATAGCCTCCGTTTCTTCTTCACCCTCTTCTTCATTTAATCTCCTTCACCTCAGTGAAAGTTCCTCTGGGGCCAAGAGTGACAACAAGAGCTTCTTTGAAAACCATGATCATGTGGATGGGGATGGAAATTCAGCCAAATCTGATGGCCATGTCTTGAGGCATTTCTTTGATGATTGGCCAAGGACACTGCAAGAGCCTGACAATGGTGAAAGCAATGGTTGCCAGAACAACAACTCAGGAACATGTCTTTCTATGTCAACACCAGGAATCACTTCCTCGGATGTGTCGTTGAAATTGTCCACTGGCCATGGAGAGGATGCGTGCCACGCGGCCTCAATGGGAGGACCACTTGCAGAGGCATTAAGATCATCCACCACCAGCTCCACTTCTTCACCAACCAGTGTTCTGCTTCAGTTGCCTCCTAGTTCTGCTTCTGAGGCTAGTTTCATTAGCACCTAA 1008 0.4187 MDLQLKQWSNRHESEQEHYSPNMPKFLPQHHPPPSPSALPLFVPEQPNTKVCTLSAFSDSTLPSAPRFSRMESCFSFAQWQELELQALIFRYMLAGAPVPPELLLPIKKSFLQLYNPPLLESGYYWGRAALDPEPGRCRRTDGKKWRCSKDAVAGQKYCDRHMHRGRNRSRKPVEQRDGSLSAIASVSSSPSSSFNLLHLSESSSGAKSDNKSFFENHDHVDGDGNSAKSDGHVLRHFFDDWPRTLQEPDNGESNGCQNNNSGTCLSMSTPGITSSDVSLKLSTGHGEDACHAASMGGPLAEALRSSTTSSTSSPTSVLLQLPPSSASEASFIST 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01311 335 SMART QLQ_2 73 109 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gma13g01311 335 Pfam QLQ 75 107 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gma13g01311 335 PANTHER - 11 335 IPR031137 GO:0005634|GO:0006351|GO:0032502
Gma13g01311 335 PANTHER GROWTH-REGULATING FACTOR 3 11 335 - -
Gma13g01311 335 MobiDBLite consensus disorder prediction 162 192 - -
Gma13g01311 335 MobiDBLite consensus disorder prediction 1 38 - -
Gma13g01311 335 MobiDBLite consensus disorder prediction 248 263 - -
Gma13g01311 335 MobiDBLite consensus disorder prediction 302 335 - -
Gma13g01311 335 ProSiteProfiles QLQ domain profile. 74 109 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gma13g01311 335 MobiDBLite consensus disorder prediction 1 19 - -
Gma13g01311 335 MobiDBLite consensus disorder prediction 290 335 - -
Gma13g01311 335 MobiDBLite consensus disorder prediction 244 263 - -
Gma13g01311 335 ProSiteProfiles WRC domain profile. 132 176 IPR014977 -
Gma13g01311 335 Pfam WRC 133 175 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01311 Gma-Chr13 27641471 27644196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01311 1 326 GRF Transcription Factor Family AT3G52910 43.299 4.81e-78 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Gma13g01311 WRC 1.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01311 - - gmx:100817197 640.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g01311 13 27641471 27644196 Gma13g01311 13 27641471 27644196 ECH
Gma10g00620 10 6723157 6726188 Gma13g01311 13 27641471 27644196 GST
Gma19g01816 19 47452135 47455112 Gma13g01311 13 27641471 27644196 PCT
Gma03g01770 03 43802417 43805419 Gma13g01311 13 27641471 27644196 PCT
Gma13g01311 13 27641471 27644196 Gma19g01816 19 47452135 47455112 PCT
Gma13g01311 13 27641471 27644196 Gma03g01770 03 43802417 43805419 PCT