Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01307 ATGCAGAAACGGAGGGCTGGGAGGAAGAAGTTCCACGAGACGCGTCACCCGGTCTACAAGGGGGTGAGGCAGAGGAACGGGAAGTGGGTGTGCGAGCTGCGACAACCTAACAACAAAAACGCGCGCGTGTGGCTCGGAACATTCACGCACCCCGACATGGCTGCTATAGCGTACGATGTTGCCGCCTTGGCTTTCAAGGGCGACAATGCTTCCTTAAACTTCCCGCACGCCGCCACCTCGTTGCCGCGCCTCAACTCGCGGACGTGTTCCGTTAGGGCCATTCAGTTTGCGGCGACGCAGGCGGCGGAGAAGCATTTTTCTTGTGCAGAGTCTCAACAACTCCAAAGGGAGGGTTCCTTAGAAGGATCAGGTTCTGGAAGCTTCTCTTTGGACGAAGACTCTTCGGAGTTTTCGTCAAAAGAAGGAGGTTCTGAAAGGTTCTTTTGGGATGAAGAGGAGGTGTTTAACATGCCGGAGTTGCTGAACAGCATGGCCGAAGCGTTGATTATCACACCGCCGGCATTGGAAAGAGGGTTCAATTGGGTTGGTGGGGAAACCACTGTGGATTTGACTCTGTGGTCAAACTGA 588 0.5442 MQKRRAGRKKFHETRHPVYKGVRQRNGKWVCELRQPNNKNARVWLGTFTHPDMAAIAYDVAALAFKGDNASLNFPHAATSLPRLNSRTCSVRAIQFAATQAAEKHFSCAESQQLQREGSLEGSGSGSFSLDEDSSEFSSKEGGSERFFWDEEEVFNMPELLNSMAEALIITPPALERGFNWVGGETTVDLTLWSN 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01307 195 SUPERFAMILY DNA-binding domain 18 76 IPR016177 GO:0003677
Gma13g01307 195 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Gma13g01307 195 PRINTS Ethylene responsive element binding protein signature 57 77 IPR001471 GO:0003700|GO:0006355
Gma13g01307 195 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 7 194 - -
Gma13g01307 195 MobiDBLite consensus disorder prediction 118 133 - -
Gma13g01307 195 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 7 194 - -
Gma13g01307 195 MobiDBLite consensus disorder prediction 118 143 - -
Gma13g01307 195 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Gma13g01307 195 CDD AP2 19 77 IPR001471 GO:0003700|GO:0006355
Gma13g01307 195 Gene3D AP2/ERF domain 18 77 IPR036955 GO:0003700|GO:0006355
Gma13g01307 195 Pfam AP2 domain 17 67 IPR001471 GO:0003700|GO:0006355
Gma13g01307 195 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01307 Gma-Chr13 27581580 27582333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01307 3 194 AP2-EREBP Transcription Factor Family AT5G51990 43.434 1.87e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma13g01307 AP2 1.9e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01307 - - gmx:100778541 355.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g01307 13 27581580 27582333 Gma13g01307 13 27581580 27582333 ECH
Gma10g00618 10 6682494 6683549 Gma13g01307 13 27581580 27582333 GST
Gma13g01307 13 27581580 27582333 Gma19g01813 19 47384221 47384787 PCT
Gma13g01307 13 27581580 27582333 Gma03g01765 03 43740703 43741376 PCT