Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01306 ATGGCTTCCCTGAATTGCCTTCCAATTCCACTCTCAACACAAATTTTCACACACATAGGCACCATGTATTCCGGCAATGCAACCAGCAGCAGCAGAGGCTCTTCGGAATCCGGTAGGTACCGCGGAGTGAGGCGTAGGAACAGCGGAAAATGGGTGTCGGAGATTCGCGAGCCCAAGAAACCTAACAGAATTTGGTTAGGCACGTTCCCCACGCCAGAAATGGCGGCGGTGGCCTATGACGTGGCTGCGTTGGCTCTCAAGGGTAAGGATGCTGGGCTCAACTTCCCTGACTCAGCTTCTTCCCTTCCTGTCCCCGCTTCGCTTTCTGCACGCGACATTCAGGTGGCAGCTGCGGCCGCGGCGGCGGCTGCTGGAGCAGCAAAGGATTCTATGAGGACACAAACAGGGAATTATAACATTTCAGAGGGGCAAGAGAATCCAACTGGGATGGGTAACCAATTTGTGGATGAGGACTTGATCTTTGACATGCCTAATGTTCTTGTCAACATGGCTCAGGGAATGCTGCTTAGTCCTCCTCCTTTTGACATTGGTTTGGAACCGAATAGCCCAGAAAACACCGAACAAGAGACAAGCCTGTGGAATTTCCCTTAA 612 0.5212 MASLNCLPIPLSTQIFTHIGTMYSGNATSSSRGSSESGRYRGVRRRNSGKWVSEIREPKKPNRIWLGTFPTPEMAAVAYDVAALALKGKDAGLNFPDSASSLPVPASLSARDIQVAAAAAAAAAGAAKDSMRTQTGNYNISEGQENPTGMGNQFVDEDLIFDMPNVLVNMAQGMLLSPPPFDIGLEPNSPENTEQETSLWNFP 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01306 203 CDD AP2 40 98 IPR001471 GO:0003700|GO:0006355
Gma13g01306 203 Gene3D AP2/ERF domain 38 97 IPR036955 GO:0003700|GO:0006355
Gma13g01306 203 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Gma13g01306 203 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Gma13g01306 203 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Gma13g01306 203 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 25 203 - -
Gma13g01306 203 MobiDBLite consensus disorder prediction 181 203 - -
Gma13g01306 203 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 25 203 - -
Gma13g01306 203 MobiDBLite consensus disorder prediction 188 203 - -
Gma13g01306 203 Pfam AP2 domain 39 88 IPR001471 GO:0003700|GO:0006355
Gma13g01306 203 SUPERFAMILY DNA-binding domain 39 98 IPR016177 GO:0003677
Gma13g01306 203 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01306 Gma-Chr13 27565401 27566334 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01306 40 203 AP2-EREBP Transcription Factor Family AT2G36450 60.694 8.86e-50 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gma13g01306 AP2 6.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01306 - - gmx:100782443 367.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g01306 13 27565401 27566334 Gma13g01306 13 27565401 27566334 ECH
Gma10g00617 10 6624547 6625417 Gma13g01306 13 27565401 27566334 GST
Gma19g01813 19 47384221 47384787 Gma13g01306 13 27565401 27566334 PCT
Gma03g01765 03 43740703 43741376 Gma13g01306 13 27565401 27566334 PCT