Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01288 ATGGCCTCTTGCGACGACGACGACGACTTCTCTCTCCTCCGCGACGACAGCCACCACCACCTCCACCAACCCTACGCGCCGCACCACCACCACTTCTCTCCCTCCGCCGTCGCCGCCTCCGTGCCGCCCAAGCCCGTTGCCGAAGCTGAGGACTTCGCCAACCCCTTCGAAGACGACGACGGTAGCGCCAGCGAGAAGCGCAAGGAGTGCGACGAGATCGGTGAGGGAGCCGCCTCGTACGGATTCAACAACAAGAGATCTAAGGCGACTCCGTCGAACGGCGCCGTGTCCGGCGGCGCCGAGTACCGCAAGGACCGGGAGGAGTGGAGCGACACGGCGATTGTGTGCCTCCTCGAGGCGTACACGGAGAAGTTCACGCAGCTGAACCGGGGGAACCTGAGGGGAAGGGATTGGGAGGAGGTTGCGGCGGTGGTGAGCGAACGGTGCGAGAACCAATCGAAGAGCGTGGAACAGTGTAAGAACAAGGTCGATAACCTGAAGAAGAGGTACAAATTGGAGCGGCACAGAATGAGCAGTGGCTGCATTTCCACCAGCCACTGGCCTTGGTTCAAGCAATTGGAGCAGATCGTCGGAAATTCTCTTCCGGCGAAGTTCTCCGACGAGGATAAAGCGGTGGTTTCCGCCGGAACTACTCCCAGGCAATCGAAGAGATATGGAGTGGCAACACCCAGCACTGGAGGTCAAGCAAATAGCATGAAGTCCAAAGCATTCTCAAACAGATGGCGGAGGGTAGTTTTCAAAATTAGTGGGGCAGCTCTTACTGGATCTGATACCTGCAATATTGACCCTAAGGTGGCCATGCTAGTTTCAAGAGAAGTTTCCATAGCTTCCCACCTTGGTGTGGAGGTGGCAATTGTTGTTGGAGGTCGTAATTTCTTCTCTGGAGATGCATGGGTAAATGCGACAGGTTTAGAAAGATGTACTGCATACCAAGTTGGCATGATGGCCACTGTGATGAATTCAATATTGCTCCAATCTACTCTAGAGAAGATGGGTGTTCAGACTCGTGTACAAACTTCAGTTGCCATGCAGGAGTTTGCTGAACCATACAATAGGCAGCGGGCCATCAGACATCTTGAGAAAGGAAGGGTAGTTATATTTGGTGGCATTGGTTTTGGTGCTGGCACTCCTCTTTTCTCAACTGACATAGCTGCAGCTCTTCGGGCTTCAGAGCTTAATGCGGAAGCAGTCCTCAAGGGTACTAACGTAGATGGTGTATATGACTGCAACTCACGAGACAACAATTTCACTTTTGAGCACATATCCTTCAGAGAGTTGGGTTCAAGAGGTGTCACCTCTATGGATATGTCAGCGCTGACATTCTGTGAGGAAAATGCCATTCCTGTTGTGGTTTTTAATCTACTGGAGCCTGGGAACATCTCAAAAGCTTTGTGTGGAGAACAGGTTGGCACACTAATTGACCAAACTGGAGCAATAAGCTAA 1464 0.5246 MASCDDDDDFSLLRDDSHHHLHQPYAPHHHHFSPSAVAASVPPKPVAEAEDFANPFEDDDGSASEKRKECDEIGEGAASYGFNNKRSKATPSNGAVSGGAEYRKDREEWSDTAIVCLLEAYTEKFTQLNRGNLRGRDWEEVAAVVSERCENQSKSVEQCKNKVDNLKKRYKLERHRMSSGCISTSHWPWFKQLEQIVGNSLPAKFSDEDKAVVSAGTTPRQSKRYGVATPSTGGQANSMKSKAFSNRWRRVVFKISGAALTGSDTCNIDPKVAMLVSREVSIASHLGVEVAIVVGGRNFFSGDAWVNATGLERCTAYQVGMMATVMNSILLQSTLEKMGVQTRVQTSVAMQEFAEPYNRQRAIRHLEKGRVVIFGGIGFGAGTPLFSTDIAAALRASELNAEAVLKGTNVDGVYDCNSRDNNFTFEHISFRELGSRGVTSMDMSALTFCEENAIPVVVFNLLEPGNISKALCGEQVGTLIDQTGAIS 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01288 487 Coils Coil 149 176 - -
Gma13g01288 487 SUPERFAMILY Carbamate kinase-like 247 480 IPR036393 -
Gma13g01288 487 CDD AAK_UMPK-PyrH-Ec 249 481 IPR015963 GO:0005737|GO:0006221|GO:0033862
Gma13g01288 487 Gene3D - 109 172 - -
Gma13g01288 487 Gene3D - 243 481 IPR036393 -
Gma13g01288 487 Pfam Myb/SANT-like DNA-binding domain 106 196 IPR044822 -
Gma13g01288 487 MobiDBLite consensus disorder prediction 80 99 - -
Gma13g01288 487 MobiDBLite consensus disorder prediction 216 240 - -
Gma13g01288 487 PANTHER ASPARTATE/GLUTAMATE/URIDYLATE KINASE FAMILY PROTEIN 59 487 IPR011817 GO:0006221|GO:0009041
Gma13g01288 487 Pfam Amino acid kinase family 250 460 IPR001048 -
Gma13g01288 487 Hamap Uridylate kinase [pyrH]. 246 481 IPR015963 GO:0005737|GO:0006221|GO:0033862
Gma13g01288 487 MobiDBLite consensus disorder prediction 20 70 - -
Gma13g01288 487 PANTHER URIDYLATE KINASE 59 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01288 Gma-Chr13 27277205 27282268 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01288 78 200 Trihelix Transcription Factor Family AT3G14180 37.302 5.95e-17 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gma13g01288 AA_kinase 2.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01288 - - gmx:100805459 908.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g01288 13 27277205 27282268 Gma13g01288 13 27277205 27282268 ECH
Gma10g00598 10 6299773 6304576 Gma13g01288 13 27277205 27282268 GST