Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01284 ATGGAGTGGAATGGGAGCACAAGACGTTATGTTCCCCGAGCAGATTCTTCTTTGAGCTTCCTTTACAACTACAACTACACCCCATATCCAGGAATGGAAGTGAAGCAACAAGCACTGGCAGAGACAAGTTCACCCATGGAAAAAATGAACTGCGGGAACCAGGAGAAGAAGAAGCGATTAACAAGTGACCAGTTAGATTCGTTGGAGAATAGTTTTCAGAAGGAGATCAAGTTAGATCCTGATAGAAAGATGAAGCTTTCCAAGGAGTTAGGGCTTCAACCTCGTCAAATTGCTGTTTGGTTCCAAAACAGGCGTGCAAGGTGGAAGAACAAGCAACTTGAACACTTGTACGATTCACTTAAACAGGAATTTGATGTCATATCCAAGGAAAAGCAGAAGCTCGAGGAAGAGGTAATGAAGTTGAAGACTATGCTGAGAGAGCAAGCTTCTAGAACCCAACAAGTGTCAACAGGATACACAGAAATCTCTGGGGAAGAAACAGTGGAAAGCACGTCAGAGGCACTGCGTTGCTCCAAACGGGGAACACTGCACCATCAGCAGCAGCAGAATAATATTGGAGAGGGAAACTGTTCCTTCACTTTGGAAGATTACAACACAGTGCCAGTACTACCCTATTGGCCTGGGGTCCCTTATTATCATCCCTAA 666 0.4474 MEWNGSTRRYVPRADSSLSFLYNYNYTPYPGMEVKQQALAETSSPMEKMNCGNQEKKKRLTSDQLDSLENSFQKEIKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKNKQLEHLYDSLKQEFDVISKEKQKLEEEVMKLKTMLREQASRTQQVSTGYTEISGEETVESTSEALRCSKRGTLHHQQQQNNIGEGNCSFTLEDYNTVPVLPYWPGVPYYHP 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01284 221 ProSiteProfiles 'Homeobox' domain profile. 51 111 IPR001356 GO:0003677
Gma13g01284 221 Coils Coil 103 151 - -
Gma13g01284 221 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 1 211 - -
Gma13g01284 221 PRINTS Lambda-repressor HTH signature 82 91 IPR000047 GO:0003677
Gma13g01284 221 PRINTS Lambda-repressor HTH signature 91 107 IPR000047 GO:0003677
Gma13g01284 221 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 211 IPR045224 GO:0003700
Gma13g01284 221 SUPERFAMILY Homeodomain-like 44 113 IPR009057 -
Gma13g01284 221 SMART HOX_1 54 115 IPR001356 GO:0003677
Gma13g01284 221 MobiDBLite consensus disorder prediction 40 64 - -
Gma13g01284 221 CDD homeodomain 56 112 IPR001356 GO:0003677
Gma13g01284 221 Pfam Homeodomain 56 110 IPR001356 GO:0003677
Gma13g01284 221 ProSitePatterns 'Homeobox' domain signature. 86 109 IPR017970 GO:0000981|GO:0006355
Gma13g01284 221 Pfam Homeobox associated leucine zipper 111 145 IPR003106 GO:0006355|GO:0043565
Gma13g01284 221 Gene3D - 48 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01284 Gma-Chr13 27230177 27232157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01284 52 150 Homeobox Transcription Factor Family AT2G36610 67.290 2.33e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gma13g01284 Homeodomain 4.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01284 - - gmx:100778007 455.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g01284 13 27230177 27232157 Gma13g01284 13 27230177 27232157 ECH
Gma10g00594 10 6235080 6237197 Gma13g01284 13 27230177 27232157 GST
Gma13g01284 13 27230177 27232157 Gma19g01793 19 47160909 47162670 PCT
Gma13g01284 13 27230177 27232157 Gma03g01741 03 43503463 43505284 PCT