Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01275 ATGGCGGTTCCCGCGACGGTCGCCGCCGTTCCGGCATCGATTTACGTCGGAGACCTCCACCCAGACGTCCAGGAACACCACCTCTTCGCGGCTTTCGTGGAGTTCGGGAGCATCGCTTCCGTTCGCGTCTGCAGAGACCGCGTGACGATGAACTCGCTCTGTTACGGTTACGTCAACTTCAGGTCTCAGCAAGATGCAATTCGTGCAATCAAGTTGAGAAACAATTCTTATCTAAATGGAAAAGTGATAAGGGTCATGTGGTTACATCGTGATCCTAATGCAAGGAAAAGTGGCAGAGGGAATGTGTTTGTTAAGAACTTAGCTGGATCCATAGATAATGCGGGGCTACATGATTTATTTAAAAAATATGGGAATATTTTGTCCAGCAAAGTTGTAATGTCTGAGGATGGGAAGAGCAAAGGGTATGGCTTTGTTCAATTTGAGTGGGAGGAATCTGCAAATAATGCCATTGAGAAGCTGAATGGCTCTACAGTGGGAAACAAGCAGATTTATGTTGGGAAGTTTGTCAGAAAAGGTGACCGCATTTTGCCTGGCTATGATGCTAAATATACAAATTTGTACATTAAAAACTTGGACTCAGATATTACAGAAGCACTTCTTCAGGAAAAGTTCTCCTCTTTTGGAAAAATTATTAGCTTGGCTATATCGAAGGATGACAATGGGCTATCAAAGGGTTTTGCATTTGTGAACTATGAGAATCCAGATGATGCTAAAAAGGCAATGGAAGCAATGAATGGATTACAATTTGGTAGTTCAAAGTATCTGTATGTAGCTAGGGCACAAAAGAAGGCTGAACGTGAGCAAATCTTGCATCGCCAATTTGAGGAGAAACGTAAGGAACAAATATTGAAATATCAGGCATCTAACTTGTATGTGAAGAACATTGATGATGATGTTACCGATAAAGAACTGCGAGATCTGTTTAGCTCATGTGGCACTATAACTTCTGTAAAAGTTATGCGAGATGACAAAGGGATAAGCAAGGGGTTTGGTTTTGTCTGCTTCTCCAACCCAGAGGAGGCTAATAAAGCTGTGATGTCTTTTAATGGATGCACGTTCCACCGTAAACCACTGTATATTGCTATTGCTCAGAGGAAAAAGGAAAGGAAAACACAGTTGAATCTCCACTATGCACCGCAACAAGCAGGATTGGATGGATCTTCAACTCCAGTTATCCCTGGTGGAGTTCCACCTTACTTCTATCATAGTGTTGCTTCACTAATGTTTCAATCTGGGCTGTTGTATCAACCTCTGGGATTGAGGTCAGGATGGAGGGCTAATGACTTTGTGCCTCCCGCTAGATCATTTCAACATTCACAGGTTCCCATTGTGAGTGACAAATTTGCATAA 1371 0.4267 MAVPATVAAVPASIYVGDLHPDVQEHHLFAAFVEFGSIASVRVCRDRVTMNSLCYGYVNFRSQQDAIRAIKLRNNSYLNGKVIRVMWLHRDPNARKSGRGNVFVKNLAGSIDNAGLHDLFKKYGNILSSKVVMSEDGKSKGYGFVQFEWEESANNAIEKLNGSTVGNKQIYVGKFVRKGDRILPGYDAKYTNLYIKNLDSDITEALLQEKFSSFGKIISLAISKDDNGLSKGFAFVNYENPDDAKKAMEAMNGLQFGSSKYLYVARAQKKAEREQILHRQFEEKRKEQILKYQASNLYVKNIDDDVTDKELRDLFSSCGTITSVKVMRDDKGISKGFGFVCFSNPEEANKAVMSFNGCTFHRKPLYIAIAQRKKERKTQLNLHYAPQQAGLDGSSTPVIPGGVPPYFYHSVASLMFQSGLLYQPLGLRSGWRANDFVPPARSFQHSQVPIVSDKFA 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01275 456 SUPERFAMILY RNA-binding domain, RBD 101 271 IPR035979 GO:0003676
Gma13g01275 456 PANTHER RNA BINDING PROTEIN 5 452 - -
Gma13g01275 456 Gene3D - 101 179 IPR012677 -
Gma13g01275 456 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 372 IPR000504 GO:0003723
Gma13g01275 456 SMART rrm2_1 101 173 IPR003954 GO:0003676
Gma13g01275 456 SMART rrm2_1 192 264 IPR003954 GO:0003676
Gma13g01275 456 SMART rrm2_1 296 368 IPR003954 GO:0003676
Gma13g01275 456 SMART rrm2_1 13 86 IPR003954 GO:0003676
Gma13g01275 456 SMART rrm1_1 192 265 IPR000504 GO:0003723
Gma13g01275 456 SMART rrm1_1 101 173 IPR000504 GO:0003723
Gma13g01275 456 SMART rrm1_1 13 86 IPR000504 GO:0003723
Gma13g01275 456 SMART rrm1_1 296 368 IPR000504 GO:0003723
Gma13g01275 456 CDD RRM4_I_PABPs 295 372 - -
Gma13g01275 456 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Gma13g01275 456 Gene3D - 5 100 IPR012677 -
Gma13g01275 456 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 12 389 IPR006515 GO:0003723
Gma13g01275 456 Coils Coil 264 284 - -
Gma13g01275 456 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 269 IPR000504 GO:0003723
Gma13g01275 456 Gene3D - 180 275 IPR012677 -
Gma13g01275 456 Gene3D - 276 382 IPR012677 -
Gma13g01275 456 SUPERFAMILY RNA-binding domain, RBD 12 99 IPR035979 GO:0003676
Gma13g01275 456 CDD RRM2_I_PABPs 98 174 IPR045305 -
Gma13g01275 456 CDD RRM1_I_PABPs 13 92 - -
Gma13g01275 456 PANTHER POLYADENYLATE-BINDING PROTEIN 5 452 - -
Gma13g01275 456 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 84 IPR000504 GO:0003723
Gma13g01275 456 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 365 IPR000504 GO:0003723
Gma13g01275 456 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 259 IPR000504 GO:0003723
Gma13g01275 456 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Gma13g01275 456 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Gma13g01275 456 SUPERFAMILY RNA-binding domain, RBD 292 384 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01275 Gma-Chr13 27113165 27116240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01275 10 437 Eukaryotic Initiation Factors Gene Family AT2G36660 56.643 8.32e-170 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01275 K13126 - gmx:100807057 896.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g01275 13 27113165 27116240 Gma13g01275 13 27113165 27116240 ECH
Gma10g00582 10 6111759 6116133 Gma13g01275 13 27113165 27116240 GST
Gma19g01782 19 47079358 47092238 Gma13g01275 13 27113165 27116240 PCT
Gma03g01732 03 43431304 43435524 Gma13g01275 13 27113165 27116240 PCT
Gma13g01275 13 27113165 27116240 Gma19g01782 19 47079358 47092238 PCT
Gma13g01275 13 27113165 27116240 Gma03g01732 03 43431304 43435524 PCT