Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01271 ATGGGCACAATGTTGGTGCCTCCATGGCTTGAGCCACTCCTAAACACATCCTTCTTCGATGTGTGTCGGATTCACGGAGATGCCGCGAGGAGCGAATGTAACATGTTTTGTCTCGACTGCAATGAGAATGCGTTTTGCTtctattgccgttcctcaaaacacaaggatcaccaagttattcagatacggagatcttcgtatcacgatgtagtgagggtggcggaaattcagacagtgttggacattagtggagttcaaacatatgtgatcaacagtgccagggttttgtttctgaatgagaggcctcaaccaaagtctggaaaaggagtagctcacatttgtgagatttgtggaagaagcctcttggacccatttcgcttctgttCTTTGGGGTGTAAGCTTGTAGGAATAAAGAGAAATGGGGATGCAAGTTTTGCTTTGGATGCTAAAAATGAGGCATCAACAATGGAGGGCATGTCAAGGAGATCGGTTTCTTCAAGACATCATCAAGAAGAAGAATTGCGTGAAGGCTCACAACAAGATATGTACCCGGCCACGCCTTCTCCACCTGCTTCTTCAAACGCAAGGAGAAGAAAAGGGATTCCTCATAGGGCACCTTTTGGCTCCTAA 630 0.2857 MGTMLVPPWLEPLLNTSFFDVCRIHGDAARSECNMFCLDCNENAFCFYCRSSKHKDHQVIQIRRSSYHDVVRVAEIQTVLDISGVQTYVINSARVLFLNERPQPKSGKGVAHICEICGRSLLDPFRFCSLGCKLVGIKRNGDASFALDAKNEASTMEGMSRRSVSSRHHQEEELREGSQQDMYPATPSPPASSNARRRKGIPHRAPFGS 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01271 209 Pfam PLATZ transcription factor 63 134 IPR006734 -
Gma13g01271 209 MobiDBLite consensus disorder prediction 162 178 - -
Gma13g01271 209 SMART bboxneu5 17 62 IPR000315 GO:0008270
Gma13g01271 209 SUPERFAMILY B-box zinc-binding domain 20 64 - -
Gma13g01271 209 MobiDBLite consensus disorder prediction 152 209 - -
Gma13g01271 209 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 4 208 - -
Gma13g01271 209 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 4 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01271 Gma-Chr13 27063216 27065073 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Gma13g01271 PLATZ 3.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01271 - - gmx:100779070 424.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00578 10 6071475 6073452 Gma13g01271 13 27063216 27065073 GST
Gma19g01778 19 47060928 47062555 Gma13g01271 13 27063216 27065073 PCT
Gma03g01728 03 43405473 43407141 Gma13g01271 13 27063216 27065073 PCT
Gma13g01271 13 27063216 27065073 Gma19g01778 19 47060928 47062555 PCT
Gma13g01271 13 27063216 27065073 Gma03g01728 03 43405473 43407141 PCT