Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01256 ATGGCGGTTCCTGGGAGGCGCAACGGCATCAACGACGACGAAGAGGAGTTAGACGACAATGCCCTTTTCGAAGAACAAGGTGTCGTCGAAGACGACACCGATACCCCTCCTCACCTCCGCGACCTCTCCGCCGCCGCTCAAATCGGCGACGCCCACGCCCTCCGTCTCGCTCTTGATAACTTGACTGGTAGTATTGATGAGCCAGTGGAGGATGGGGATACGGCTCTTCATTTGACATGTTTATATGGCCATTTGGCTTGTGTCCAGCTGCTAATAGAAAGAGGAGCAAACATTGAGGCTAAGGATGAAGAGGGTGCTATTCCTTTGCACGATGCTTGTGCAGGAGGATTTACTGAGATAGTCCAGCTGCTGCTTAACAGAGCAAATGATGCAGAACATATAAAGAGAATGCTAGAATCAGTTGATTCTGAGGGTGATACTCCTCTCCATCACGCTGCAAGAGGTGAGCATATTGATGTAATTAGGTTGCTGCTGTCTAATGGCGCATCTCCCACAAAGGCAAACTTATACGGGAAGGCCCCTGCGGATTTGCCTGAACAGGAAGATGCTCGGAGGCTGCTTGAAGCTGCAGCTCTTGCCATGGCATGCCAGTAG 615 0.5122 MAVPGRRNGINDDEEELDDNALFEEQGVVEDDTDTPPHLRDLSAAAQIGDAHALRLALDNLTGSIDEPVEDGDTALHLTCLYGHLACVQLLIERGANIEAKDEEGAIPLHDACAGGFTEIVQLLLNRANDAEHIKRMLESVDSEGDTPLHHAARGEHIDVIRLLLSNGASPTKANLYGKAPADLPEQEDARRLLEAAALAMACQ 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01256 204 ProSiteProfiles Ankyrin repeat region circular profile. 144 170 - -
Gma13g01256 204 PANTHER SOWAH (DROSOPHILA) HOMOLOG 1 204 - -
Gma13g01256 204 ProSiteProfiles Ankyrin repeat profile. 144 176 IPR002110 GO:0005515
Gma13g01256 204 ProSiteProfiles Ankyrin repeat profile. 71 103 IPR002110 GO:0005515
Gma13g01256 204 Pfam Ankyrin repeats (3 copies) 104 173 IPR002110 GO:0005515
Gma13g01256 204 ProSiteProfiles Ankyrin repeat region circular profile. 71 103 - -
Gma13g01256 204 PANTHER SOWAH (DROSOPHILA) HOMOLOG 1 204 - -
Gma13g01256 204 Pfam Ankyrin repeat 71 102 IPR002110 GO:0005515
Gma13g01256 204 ProSiteProfiles Ankyrin repeat region circular profile. 104 130 - -
Gma13g01256 204 Gene3D - 36 202 IPR036770 -
Gma13g01256 204 SUPERFAMILY Ankyrin repeat 42 186 IPR036770 -
Gma13g01256 204 SMART ANK_2a 104 133 IPR002110 GO:0005515
Gma13g01256 204 SMART ANK_2a 71 100 IPR002110 GO:0005515
Gma13g01256 204 SMART ANK_2a 144 173 IPR002110 GO:0005515
Gma13g01256 204 ProSiteProfiles Ankyrin repeat profile. 104 136 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01256 Gma-Chr13 26869813 26872457 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01256 66 188 Ion Channels AT2G26650 29.932 2.25e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01256 - - gmx:100527544 379.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g01256 13 26869813 26872457 Gma13g01256 13 26869813 26872457 ECH
Gma10g00544 10 5596601 5599045 Gma13g01256 13 26869813 26872457 GST