Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01255 ATGCAAGTCCAAGAGGAATTACTTGTGGCTTCCAAGGATCACACCCACCAAATGATGATGATCAAGGGCAAGCGAACCAAGCGTCAAAGGGCACCATCCCCTCTTAGTCTAGCCATGCCTTATAATAATTCAACCTCAAGTAGCACCAACAATTCCATTGATAGTGCCACAACCTCACCCTCTCCCACCAACACAATTGAATTGAGAGAAGACGAAGACATGGCGAATTGTCTTATTCTTCTCGCTCAAGGCAGACACCACGTGGCAGCACCAACGTCGTATCACAACAATGACAACAACGATAACCACAAGTCAACAAGCCTATACCTTTACCAGTGCAAGACTTGCAACAGATATTTCCCTTCATTCCAAGCACTTGGAGGACATAGAGCCAGTCACAAGAAGCCTAAGCAAAACGGCACCTTTTCATCAGAAGCAGTTACTACTTTTGTTGAAGAGAATAATGATCGTTATGACCCCACCACAAGTACCACCCTCTCCTTGAAAATACCAAATGGGGTTAATAATAATATGTGTAGCACAACAACAACAACAACAAAGGCTAAGGTTCACGAGTGTTCTATCTGTGGTGCTGAATTCTCATCAGGGCAAGCTTTGGGGGGCCACATGAGGCGCCACAGAACTCTTGTGAATGCTTCTTTAGCAACTTCTATGAGTGGTGGAAATGTTGTTGGTGTTGGTGGTAACAATGAATTTCAAGAAGCCAAGAAACCCTTGAAGTTGGACTTGAATCTTCCAGCACTACCAGAGGATGATCATAGAGAATCCAAGTTTTCGTTTCAGCAAAGAGAAAAAAACGTTATTGTCTTCTCTAAGCAGTCTTCTTTGGTGGATTGTCATTACTGA 867 0.4348 MQVQEELLVASKDHTHQMMMIKGKRTKRQRAPSPLSLAMPYNNSTSSSTNNSIDSATTSPSPTNTIELREDEDMANCLILLAQGRHHVAAPTSYHNNDNNDNHKSTSLYLYQCKTCNRYFPSFQALGGHRASHKKPKQNGTFSSEAVTTFVEENNDRYDPTTSTTLSLKIPNGVNNNMCSTTTTTTKAKVHECSICGAEFSSGQALGGHMRRHRTLVNASLATSMSGGNVVGVGGNNEFQEAKKPLKLDLNLPALPEDDHRESKFSFQQREKNVIVFSKQSSLVDCHY 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01255 288 PANTHER ZINC FINGER, C2H2-LIKE PROTEIN-RELATED 16 287 - -
Gma13g01255 288 PANTHER ZINC FINGER PROTEIN ZAT5 16 287 - -
Gma13g01255 288 ProSitePatterns Zinc finger C2H2 type domain signature. 193 213 IPR013087 -
Gma13g01255 288 SMART c2h2final6 191 213 IPR013087 -
Gma13g01255 288 SMART c2h2final6 111 133 IPR013087 -
Gma13g01255 288 Pfam C2H2-type zinc finger 190 214 - -
Gma13g01255 288 Pfam C2H2-type zinc finger 111 136 - -
Gma13g01255 288 Gene3D Classic Zinc Finger 108 213 - -
Gma13g01255 288 MobiDBLite consensus disorder prediction 36 63 - -
Gma13g01255 288 ProSiteProfiles Zinc finger C2H2 type domain profile. 111 138 IPR013087 -
Gma13g01255 288 MobiDBLite consensus disorder prediction 21 63 - -
Gma13g01255 288 SUPERFAMILY beta-beta-alpha zinc fingers 110 213 IPR036236 -
Gma13g01255 288 ProSiteProfiles Zinc finger C2H2 type domain profile. 191 213 IPR013087 -
Gma13g01255 288 ProSitePatterns Zinc finger C2H2 type domain signature. 113 133 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01255 Gma-Chr13 26863900 26864766 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01255 17 288 C2H2 Transcription Factor Family AT2G28200 39.597 5.87e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma13g01255 zf-C2H2_6 1.1e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01255 - - gmx:100815595 551.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g01255 13 26863900 26864766 Gma03g01708 03 43256452 43257512 ECH
Gma13g01255 13 26863900 26864766 Gma13g01255 13 26863900 26864766 ECH
Gma13g01255 13 26863900 26864766 Gma11g01579 11 16967680 16969026 ECH
Gma13g01255 13 26863900 26864766 Gma12g00726 12 6532347 6533294 ECH
Gma13g01255 13 26863900 26864766 Gma13g02863 13 43134543 43135859 ECH
Gma13g01255 13 26863900 26864766 Gma12g01686 12 37304460 37305861 ECH
Gma10g00543 10 5590845 5592009 Gma13g01255 13 26863900 26864766 GST
Gma19g01758 19 46895445 46896305 Gma13g01255 13 26863900 26864766 PCT
Gma03g01708 03 43256452 43257512 Gma13g01255 13 26863900 26864766 PCT
Gma13g01255 13 26863900 26864766 Gma19g01758 19 46895445 46896305 PCT
Gma13g01255 13 26863900 26864766 Gma03g01708 03 43256452 43257512 PCT