Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01254 ATGGCGTACCGCAGCGCCATCGTGCGCAGAGCCCAAGAGGCCAGCCACCGCGACACATGGCGAGCCGCTCTCTCCGAATTCATCTCCACACTCATCTTCGTCTTCGCCGGCTCCGGCTCCTCCGTGGCCGTCAACAAGCTCACCGTCGACAAGCCCTCCGCCCTCGTCGTCGCCGCCGTCGCACACGCCTTCGCCCTATTCGTCGCCGTCTCTGTAAGCACTAACATCTCAGGCGGCCACGTCAACCCTGCTGTTACGTTCGGCGCCTTCGTCGGCGGCAACCTCACCTTGCTCCGCTGCGTGCTCTTCTGGATCGCGCAGATTCTTGGCTCCGTCATCGCTTGCTTGCTCCTCAAATTCATCACCGGCGGACAGGATGTACCGGTTTTCAAACTTTCGAGTGGCGTGGGAGTGGGGAACGCGGTGGTGTTGGAGATGGTGATGACATTCGGGTTGGTGTACACGGTGTACGCGACCACCGTTGACCCGAGGAGCAGGAGGGGTAGTTTGGGAGTGATGGCGCCAATTGTGATTGGTTTCATCGTTGGAGCGAATGTTTTGGTGGGTGGGCCTTTTGATGGGGCATCCATGAACCCGGCTGCATCATTTGGGCCTGCAGTGGTGGGCTGGAGTTGGAAAAATCATTGGGTTTATTGGGTTGGGCCTCTCGTTGGCGGTGGGCTTGCTGGGTTTATGTATGAGCTCATCTTTGTTAGCCATAGCCGTCAGAGGTTTCGCAGAAGTTATTATTAA 753 0.579 MAYRSAIVRRAQEASHRDTWRAALSEFISTLIFVFAGSGSSVAVNKLTVDKPSALVVAAVAHAFALFVAVSVSTNISGGHVNPAVTFGAFVGGNLTLLRCVLFWIAQILGSVIACLLLKFITGGQDVPVFKLSSGVGVGNAVVLEMVMTFGLVYTVYATTVDPRSRRGSLGVMAPIVIGFIVGANVLVGGPFDGASMNPAASFGPAVVGWSWKNHWVYWVGPLVGGGLAGFMYELIFVSHSRQRFRRSYY 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01254 250 SUPERFAMILY Aquaporin-like 13 243 IPR023271 -
Gma13g01254 250 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma13g01254 250 PRINTS Major intrinsic protein family signature 62 86 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma13g01254 250 PRINTS Major intrinsic protein family signature 99 118 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma13g01254 250 PRINTS Major intrinsic protein family signature 144 162 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma13g01254 250 PRINTS Major intrinsic protein family signature 179 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma13g01254 250 PRINTS Major intrinsic protein family signature 216 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma13g01254 250 Pfam Major intrinsic protein 14 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma13g01254 250 Gene3D Glycerol uptake facilitator protein. 4 248 IPR023271 -
Gma13g01254 250 TIGRFAM MIP: MIP family channel proteins 25 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma13g01254 250 PANTHER AQUAPORIN-8 6 247 IPR034294 -
Gma13g01254 250 CDD MIP 21 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma13g01254 250 ProSitePatterns MIP family signature. 80 88 IPR022357 -
Gma13g01254 250 PANTHER AQUAPORIN TIP1-1 6 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01254 Gma-Chr13 26856264 26858288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01254 1 250 Major Intrinsic Protein MIP AT2G36830 66.403 2.82e-117 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01254 K09873 - gmx:100820403 478.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g01254 13 26856264 26858288 Gma13g01254 13 26856264 26858288 ECH
Gma19g01757 19 46874554 46875400 Gma13g01254 13 26856264 26858288 PCT
Gma03g01707 03 43235372 43236691 Gma13g01254 13 26856264 26858288 PCT
Gma13g01254 13 26856264 26858288 Gma19g01757 19 46874554 46875400 PCT
Gma13g01254 13 26856264 26858288 Gma03g01707 03 43235372 43236691 PCT