Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01250 ATGCAAGGAGAAAATTTGCGTAAAGGGACTTGGCTCCAAGAGGAAGATGAACAATTGACTAGCTTTGTGGCCCGTCTTGGGGAAAGAAGGTGGGATTCCCTTGCCAAAGTAGCTGGCCTTAAGAGAAGTGGTAAAAGCTGTAGGTTAAGATGGATGAACTATCTTCGTCCAAATCTCAAGCATGGTCATTTTAGTGTTGAAGAAGAGCAGCTTATTGTTCAGCTTCAGCAGGAATTGGGTAACAAGTGGGCAAAGATTGCTCGGAAACTTCCAGGAAGAACTGACAATGAAATCAAGAATTACTGGAAAACTCATTTAAGAAAAAGAGCTCAAGCTCAACAAGGAGATTTTAAGTACAAATTAGAAATAGCAACACAAGAAGTCAACCAGAAAAGTATTGACATGGATTCCAAGAATTGCAAACATGGAAACGTTTGGTGTCAAGATAGTGAGTGGGAGACAAAGGATAGTAGCTCCACAGACACTTTATCCTTATCAGATTGGGAATTAAGAAGCTCACCCTATGAAACTAGGATATTGGATTGGATAGCAGAATTGCAAAATGGATATGGTGAGAACGAACTAGAACAAGATTGTAATAGCACAGGAACGTGCAACTATTATCCTCAAGAATTTGATGAGGGATGTGACTCATGGGATTATTCAGGTTCCTTATGGGATATGAACTAA 690 0.3986 MQGENLRKGTWLQEEDEQLTSFVARLGERRWDSLAKVAGLKRSGKSCRLRWMNYLRPNLKHGHFSVEEEQLIVQLQQELGNKWAKIARKLPGRTDNEIKNYWKTHLRKRAQAQQGDFKYKLEIATQEVNQKSIDMDSKNCKHGNVWCQDSEWETKDSSSTDTLSLSDWELRSSPYETRILDWIAELQNGYGENELEQDCNSTGTCNYYPQEFDEGCDSWDYSGSLWDMN 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01250 229 SUPERFAMILY Homeodomain-like 5 102 IPR009057 -
Gma13g01250 229 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Gma13g01250 229 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Gma13g01250 229 Gene3D - 1 61 - -
Gma13g01250 229 SMART sant 60 108 IPR001005 -
Gma13g01250 229 SMART sant 7 57 IPR001005 -
Gma13g01250 229 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Gma13g01250 229 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Gma13g01250 229 PANTHER MYB TRANSCRIPTION FACTOR 2 229 - -
Gma13g01250 229 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 229 - -
Gma13g01250 229 Gene3D - 63 142 - -
Gma13g01250 229 CDD SANT 10 55 IPR001005 -
Gma13g01250 229 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 55 IPR017930 -
Gma13g01250 229 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Gma13g01250 229 CDD SANT 64 106 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01250 Gma-Chr13 26817963 26819624 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01250 4 114 MYB Transcription Factor Family AT5G59780 60.360 3.31e-46 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma13g01250 Myb_DNA-binding 2.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01250 K09422 - gmx:100783472 429.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g01250 13 26817963 26819624 Gma13g01250 13 26817963 26819624 ECH