Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01244 ATGTCTACCTCCGCAGCTTCTCTCGCACTCCCAACCCTCACTCTCCGAACTCGACAACCTCTCTGTTCTCCCCAATGCTTCTCCTCGTCCCTCTCCCTCACCCCTAACTCCAAACCCATTTCCATTTCCGCCGTTTTCCTCAAAACAACGCTGTCGTCGTCGTCGCCGTTGTCGCTGTCGTCTCGCTTCGTTCCCCATGTCTCTGTGTTGGAGCAGGAGGAGGACACCTTCGGCGACGGAGACGGCCCCAGCTTCTCCCGCGACCTTAAGCTCTTTGTCGGGAATCTCCCCTTCAGTGTCGACAGTGCGCGGCTCGCGGAGCTCTTCGAGAGTGCGGGGAATGTGGAGGTGGTTGAGGTTATTTATGATAAGACTACTGGGAGGAGCAGGGGGTTTGGGTTTGTGACCATGTCTTCCGTTGAGGAAGCTGAAGCGGCTGCTAAGCAGTTCAATGGCTATGAACTTGATGGAAGATCATTGAGAGTGAATTCTGGACCACCTCCTGCTCGGAATGAGAGTGCTCCTCGGTTTAGAGGTGGTTCTTCTTTCGGTTCCAGAGGTGGTGGTCCTTCAGATAGTGAAAACCGTGTTCATGTAGGTAATCTTGCTTGGGGTGTTGACGATGTAGCACTTGAGTCTTTGTTCCGTGAACAAGGGAAGAAGGTCTTGGAAGCTAGGGTAATCTATGACAGGGAAAGTGGACGATCTAGAGGCTTTGGATTCGTGACTTTCGGTAGCCCTGATGAGGTCAAAAGTGCAATTCAGTCCTTAGATGGTGTGGACTTGAATGGCAGAGCTATACGAGTCTCATTAGCAGATTCCAAGCCCAAGCGGTTCTGA 840 0.5238 MSTSAASLALPTLTLRTRQPLCSPQCFSSSLSLTPNSKPISISAVFLKTTLSSSSPLSLSSRFVPHVSVLEQEEDTFGDGDGPSFSRDLKLFVGNLPFSVDSARLAELFESAGNVEVVEVIYDKTTGRSRGFGFVTMSSVEEAEAAAKQFNGYELDGRSLRVNSGPPPARNESAPRFRGGSSFGSRGGGPSDSENRVHVGNLAWGVDDVALESLFREQGKKVLEARVIYDRESGRSRGFGFVTFGSPDEVKSAIQSLDGVDLNGRAIRVSLADSKPKRF 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01244 279 CDD RRM_HP0827_like 90 163 - -
Gma13g01244 279 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 195 274 IPR000504 GO:0003723
Gma13g01244 279 MobiDBLite consensus disorder prediction 158 194 - -
Gma13g01244 279 PANTHER 29 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 1 279 - -
Gma13g01244 279 PANTHER OS02G0815200 PROTEIN 1 279 - -
Gma13g01244 279 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 167 IPR000504 GO:0003723
Gma13g01244 279 SUPERFAMILY RNA-binding domain, RBD 88 193 IPR035979 GO:0003676
Gma13g01244 279 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 268 IPR000504 GO:0003723
Gma13g01244 279 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 161 IPR000504 GO:0003723
Gma13g01244 279 SMART rrm1_1 196 270 IPR000504 GO:0003723
Gma13g01244 279 SMART rrm1_1 90 163 IPR000504 GO:0003723
Gma13g01244 279 Gene3D - 192 278 IPR012677 -
Gma13g01244 279 Gene3D - 72 191 IPR012677 -
Gma13g01244 279 SUPERFAMILY RNA-binding domain, RBD 192 278 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01244 Gma-Chr13 26753932 26756400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01244 91 279 Eukaryotic Initiation Factors Gene Family AT3G16380 31.217 2.30e-18 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01244 - - gmx:100812934 520.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00531 10 5471520 5474223 Gma13g01244 13 26753932 26756400 GST
Gma19g01665 19 46015994 46020432 Gma13g01244 13 26753932 26756400 PCT
Gma03g01620 03 42381302 42385225 Gma13g01244 13 26753932 26756400 PCT