Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01241 ATGACACAAGAAGGAAATGGCAACACCAACTTCTGTATGAGTGTTAACAACAACGGCTACATTAGCGCTAATGACCCGTTGAACTGGGGCGCGGCGGCGGAGGCGATGGCCGGGAGCCACCTCGACGAGGTCAAGCGCATGGTGGAGGAGTACCGGAGGCCGGTCGTGAAGCTCGGCGGCGAGACCCTGACGATCTCGCAGGTGGCGGCGATCGCGGCGCACGACCAGGGGGTGAAGGTGGAGCTGGCGGAGTCCTCCAGGGCCGGGGTTAAGGCCAGCAGCGACTGGGTGATGGAGAGCATGGACAAGGGCACTGACAGCTACGGCGTCACCACTGGGTTCGGTGCTACCTCCCACCGGAGAACCAAACAAGGCGGTGCCTTGCAGAAGGAGCTAATTAGGTTTTTGAATGCTGGAATATTTGGCAATGGTACAGAGTCCAATTGCACCCTACCCCACACAGCAACCAGAGCAGCTATGCTAGTGAGAATCAACACACTCCTCCAAGGCTACTCAGGAATTAGGTTTGAAATTTTGGAGGCAATCACAAAGCTTCTGAACAACAACATTACCCCATGTTTGCCACTTAGGGGAACAATCACAGCATCTGGTGACCTTGTTCCTTTGTCCTACATTGCTGGTTTGCTAACTGGTAGACCAAACTCCAAGGCTGTTGGACCCTCTGGTGAAATTCTGAATGCCAAAGAAGCCTTTGAATTGGCCAACATTAGTGCTGAGTTCTTTGAGTTGCAACCTAAGGAAGGCCTTGCCCTTGTGAATGGCACTGCTGTTGGTTCTGGCTTGGCTTCAATTGTTCTTTTTGAAGCCAACATCATTGCTGTCTTGTCTGAGGTTATTTCAGCAATTTTTGCTGAAGTGATGCAAGGGAAGCCAGAGTTCACTGACCATTTGACTCATAAACTAAAGCACCACCCTGGACAGATTGAAGCTGCTGCTATCATGGAACACATTTTGGAAGGAAGCTCTTACATCAAAGCTGCTAAGAAGTTGCATGAGATTGATCCTTTGCAAAAGCCTAAACAAGACCGCTATGCACTTAGGACTTCACCACAATGGCTTGGTCCTCAAATTGAAGTGATTAGATTCTCTACCAAGTCAATTGAGAGGGAGATAAACTCAGTCAATGACAACCCTTTGATTGATGTCTCAAGGAACAAGGCCCTTCATGGTGGTAACTTCCAAGGAACACCTATTGGAGTGTCCATGGATAACACCCGTTTGGCTCTTGCATCAATTGGCAAGCTCATGTTTGCTCAATTCTCTGAGCTTGTCAATGACTATTACAACAATGGGTTGCCCTCAAATCTCACTGCCAGCAGAAACCCCAGCTTGGATTATGGATTCAAGGGAGCTGAAATTGCAATGGCCTCTTATTGCTCTGAACTCCAATACTTGGCGAACCCGGTGACGAGCCACGTGCAAAGCGCCGAGCAACACAACCAAGATGTGAACTCTCTCGGGCTGATTTCATCAAGGAAGACACATGAGGCTATTGAGATCCTCAAGCTCATGTCCTCCACTTTCCTCATTGCACTTTGCCAAGCCATTGACTTGAGGCATTTGGAGGAGAATTTGAAGAACACGGTGAAGAACGTTGTGAGCCAAGTTGCTAAGCGGACTCTCACCACAGGTGTCAATGGAGAGCTTCACCCTTCAAGGTTTTGTGAGAAGGACTTGCTCAAGGTTGTTGATAGGGAGTACACATTTGCATACATTGATGACCCCTGCAGTGGCACATACCCTTTGATGCAAAAGCTGAGGCAAGTGCTTGTGGACTATGCATTGGCCAATGGGGAGAACGAGAAGAACACGAACACATCAATCTTCCAAAAGATCGCAACATTTGAGGAGGAGTTGAAGACCCTTTTGCCTAAGGAAGTGGAAGGTGCAAGAGTTGCATATGAGAATGACCAATGTGCTATTCCCAACAAGATCAAGGAATGCAGGTCTTACCCCTTGTACAAGTTTGTGAGAGAGGAGTTGGGGACAGCATTGCTTACTGGTGAAAGGGTTGTCTCACCGGGTGAAGAGTGTGACAAAGTTTTTACTGCTATGTGCCAAGGGAAGATCATTGATCCACTTTTGGAATGCCTTGGAGAGTGGAATGGTGCTCCACTTCCAATTTGTTAG 2151 0.4854 MTQEGNGNTNFCMSVNNNGYISANDPLNWGAAAEAMAGSHLDEVKRMVEEYRRPVVKLGGETLTISQVAAIAAHDQGVKVELAESSRAGVKASSDWVMESMDKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESNCTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEILNAKEAFELANISAEFFELQPKEGLALVNGTAVGSGLASIVLFEANIIAVLSEVISAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILEGSSYIKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDYYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTHEAIEILKLMSSTFLIALCQAIDLRHLEENLKNTVKNVVSQVAKRTLTTGVNGELHPSRFCEKDLLKVVDREYTFAYIDDPCSGTYPLMQKLRQVLVDYALANGENEKNTNTSIFQKIATFEEELKTLLPKEVEGARVAYENDQCAIPNKIKECRSYPLYKFVREELGTALLTGERVVSPGEECDKVFTAMCQGKIIDPLLECLGEWNGAPLPIC 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01241 716 Gene3D - 16 262 IPR024083 -
Gma13g01241 716 SUPERFAMILY L-aspartase-like 25 716 IPR008948 GO:0003824
Gma13g01241 716 CDD PAL-HAL 61 526 IPR001106 -
Gma13g01241 716 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 17 716 - -
Gma13g01241 716 Gene3D Fumarase/aspartase (Central domain) 263 711 - -
Gma13g01241 716 PANTHER HISTIDINE AMMONIA-LYASE 17 716 IPR001106 -
Gma13g01241 716 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 25 705 IPR005922 GO:0005737|GO:0006559|GO:0016841
Gma13g01241 716 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 198 214 IPR022313 GO:0016841
Gma13g01241 716 Gene3D - 529 650 IPR023144 -
Gma13g01241 716 Pfam Aromatic amino acid lyase 63 543 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01241 Gma-Chr13 26689587 26694407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01241 18 716 Monolignol Biosynthesis Gene Families AT2G37040 83.405 0.0 1239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01241 K10775 - gmx:100803857 1419.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00529 10 5397352 5401828 Gma13g01241 13 26689587 26694407 GST
Gma19g01721 19 46527255 46531217 Gma13g01241 13 26689587 26694407 PCT
Gma03g01673 03 42844985 42848878 Gma13g01241 13 26689587 26694407 PCT