Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01235 ATGCAATGGCTTAATTGGGTCTTCTCTTCTCAGAATCTGGGTACCAAAAACAGAAGAGAAAAAAGGGGATTTTTGGTTTTGTTGAGCTCAGAGAAGCTGAGGCTTTTTGGGATCAAACTATATCTGTTTGAACTTGAGTCTAGTTCAAGTCAGGTTGCAATGAAGTGTTTTCCATTCTACTTTGGAGAGAAGAAGGATGGTCCTAAGAGCTTGCAGTCAATATCGGGCCAGTCTAACAGTTCTACTTATGTTGAGGCTGAGATGAGAAGATCTGGTTCTGAATTGAACTCTATGGATGCCTCAGATAACAGCACAGACTCACTCAGGAGAAGTGCATTTCCCAGTTTGTCTCAAAGACCCAGCAACCTCAGAGAATTTACTGTATCTGAACTGAAAACAGCCACAAAGAGTTTTAGTCGCTCAGTCATGCTTGGAGAAGGTGGGTTTGGGTGTGTCTACAAGGGGTTGATCAAGAGTGTAGATGATCCTTCCACAAAAATTGAAGTTGCAGTTAAACAACTTGGCAGAAGAGGAATTCAGGGGCATAAGGAATGGGTGACAGAAGTGAATGTTCTGGGTATTGTGGAGCATCCCAATCTGGTGAAACTAGTGGGATACTGCGCTGATGATGATGAAAGAGGAATCCAGCGGCTTCTGATTTATGAATATATGCCTAACAGAAGTGTGGAACACCATTTATCGCCACGATCAGACACTCCTCTGCCATGGAGTAGGAGGTTGAAAATAGCCCAAGATGCAGCTCGTGGCTTGACATACCTGCATGAGGAAATGGATTTTCAGATAATTTTCAGAGATTTCAAATCTTCAAATATCCTTCTGGACGAGCTGTGGAATGCAAAACTATCAGACTTCGGGCTAGCTAGATTGGGACCATCTGATGGGCTGACTCATGTCTCCACAGCGGTCGTAGGAACAATGGGTTATGCAGCTCCAGAATATGTTCAAACTGGACGTCTCACGTCAAAGAGTGATGTATGGAGCTATGGTGTCTTCCTTTATGAACTCATCACTGGCCGCCGTCCAATTGATCGAAATCGCCCCAAGGGTGAGCAGAAGCTGTTGGAATGGGTAAGGCCATACCTTTCAGATGGGAGGAGATTTCAACTAATATTGGATCCAAGACTTGAGAGAAGACACATCCTCAAGTCAGCTCAAAAACTTGCTATAATAGCTAACAGATGCTTGGTTAGAAACCCAAAGAATCGCCCGAAGATGAGTGAAGTGTTGGAAATGGTGACTCGGGTTGTGGAGTCTTCAGTGAGTACTAATCTACAGCCACCCTTGAAGAGTGTAGCCTCAGCAGAAGCTTCTCAGGCTGCTGAAATAAAGAACAAAAAAGTGACCAAGGATCAAAACCCAGATTGCAATTGGTTAAGGATGTGGAGGCCAAAGCTTTTAAGAGCATTAGATTGTTGTAGCTTTAAAGTTTAA 1452 0.436 MQWLNWVFSSQNLGTKNRREKRGFLVLLSSEKLRLFGIKLYLFELESSSSQVAMKCFPFYFGEKKDGPKSLQSISGQSNSSTYVEAEMRRSGSELNSMDASDNSTDSLRRSAFPSLSQRPSNLREFTVSELKTATKSFSRSVMLGEGGFGCVYKGLIKSVDDPSTKIEVAVKQLGRRGIQGHKEWVTEVNVLGIVEHPNLVKLVGYCADDDERGIQRLLIYEYMPNRSVEHHLSPRSDTPLPWSRRLKIAQDAARGLTYLHEEMDFQIIFRDFKSSNILLDELWNAKLSDFGLARLGPSDGLTHVSTAVVGTMGYAAPEYVQTGRLTSKSDVWSYGVFLYELITGRRPIDRNRPKGEQKLLEWVRPYLSDGRRFQLILDPRLERRHILKSAQKLAIIANRCLVRNPKNRPKMSEVLEMVTRVVESSVSTNLQPPLKSVASAEASQAAEIKNKKVTKDQNPDCNWLRMWRPKLLRALDCCSFKV 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01235 483 MobiDBLite consensus disorder prediction 70 87 - -
Gma13g01235 483 SUPERFAMILY Protein kinase-like (PK-like) 114 419 IPR011009 -
Gma13g01235 483 MobiDBLite consensus disorder prediction 66 114 - -
Gma13g01235 483 PANTHER OS01G0588500 PROTEIN-RELATED 57 461 - -
Gma13g01235 483 Gene3D Transferase(Phosphotransferase) domain 1 224 439 - -
Gma13g01235 483 PANTHER KINASE 1B 57 461 - -
Gma13g01235 483 CDD STKc_IRAK 144 421 - -
Gma13g01235 483 Gene3D Phosphorylase Kinase; domain 1 118 223 - -
Gma13g01235 483 ProSiteProfiles Protein kinase domain profile. 138 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g01235 483 Pfam Protein tyrosine and serine/threonine kinase 143 417 IPR001245 GO:0004672|GO:0006468
Gma13g01235 483 MobiDBLite consensus disorder prediction 94 114 - -
Gma13g01235 483 ProSitePatterns Protein kinases ATP-binding region signature. 144 172 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01235 Gma-Chr13 26632699 26636753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01235 54 456 Glycoside Hydrolase AT3G07070 42.518 2.16e-94 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gma13g01235 PK_Tyr_Ser-Thr 4.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01235 - - gmx:100305438 942.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00523 10 5327969 5330889 Gma13g01235 13 26632699 26636753 GST
Gma19g01727 19 46576215 46580568 Gma13g01235 13 26632699 26636753 PCT
Gma03g01679 03 42911232 42914300 Gma13g01235 13 26632699 26636753 PCT