Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01209 ATGCTAGCGCTCTTCTGCTCCCAACGCATATGCATACTGCACAATCACCACCACCACCCTTCGAGTAATATGGAGATCACGAGCAGCCATAGCAGCGGCAGCATGATGTGGTTTTTCAAAGATAAGGGCTTTGATGACAACAGTGTGCAAGGAATGTTCCGAAAGTGCCGGCGCCTCGAGGGTGTGCATCAGGAAAGAGCAAGTGAGAATTGGGACTATTTGAGAAGCATTGGCATTGAGGAAAGGAAACTGCCCTCAATTGTTTCGAAATGCCCCAAAATTCTTGCACTAGATCTTTATGGGAAGATTGTGCCCACTGTTGAGTGTCTCAGGACATTAGGAACAAAACCTAATGAGGTTGCTTCTGCCATAGCAAAGTTCCCTCACATACTCTCAAACAGTGTGGAAGAGAAGCTTTGTCCCCTTTTGGCATTCTTTCAGACTCTAGGTATCCCTGAAAAGCAAATTGGGAAAATGATACTGCTCAACCCTAGGCTTATTAGTTACAGCATTGAAACAAAGCTGACGGAAATTGTGAACTTCCTTGTGAACCTTGGTCTCAGTAAGGATGGAATGATCGGAAAAGTTATAGTCAGGGACCCGTATATTATGGGTTATAGTGTCGATAAGAGGCTTCGCCCTACTTCAGATTTTCTGAAGTCAATAGGGCTGAGTGAGGCAGATCTTCAAGCGGTGGCTGTGAACTTCCCAGGAATCTTGAGTAGAGATGTGAACAAGCTTTTGGTACCCAATTATGCGTATCTAAAGAAACGTGGATTTGAAGAGAGACAGATAGTTGCTTTGGTGGTTGGTTTTCCTCCTATTCTGATCAAGAGCATTCAGAATTCGTTAGAACCGAGGATCAAGTTTTTAGTAGATGTAATGGGGAGACAAGTTGATGAAGTCATTGATTATCCTTGCTTCTTTCGGCATGGCCTGAAGAGAAGAATAGAGCCACGATACAAACTTCTAAAGGAGAGGAGTTTAAATTGTAGCTTGAGTGAAATGTTGGATTGTAATAGGAAGAAGTTCTTCATGAAGTTTGGCTTGTTAGAAGGCCATGCCTTGAGTAACTAG 1077 0.4336 MLALFCSQRICILHNHHHHPSSNMEITSSHSSGSMMWFFKDKGFDDNSVQGMFRKCRRLEGVHQERASENWDYLRSIGIEERKLPSIVSKCPKILALDLYGKIVPTVECLRTLGTKPNEVASAIAKFPHILSNSVEEKLCPLLAFFQTLGIPEKQIGKMILLNPRLISYSIETKLTEIVNFLVNLGLSKDGMIGKVIVRDPYIMGYSVDKRLRPTSDFLKSIGLSEADLQAVAVNFPGILSRDVNKLLVPNYAYLKKRGFEERQIVALVVGFPPILIKSIQNSLEPRIKFLVDVMGRQVDEVIDYPCFFRHGLKRRIEPRYKLLKERSLNCSLSEMLDCNRKKFFMKFGLLEGHALSN 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01209 358 Pfam mTERF 32 190 IPR003690 GO:0003690|GO:0006355
Gma13g01209 358 Pfam mTERF 192 344 IPR003690 GO:0003690|GO:0006355
Gma13g01209 358 PANTHER CGI-12 PROTEIN-RELATED 34 351 IPR003690 GO:0003690|GO:0006355
Gma13g01209 358 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF6, CHLOROPLASTIC/MITOCHONDRIAL 34 351 - -
Gma13g01209 358 Gene3D Transcription termination factor 3, mitochondrial 118 352 IPR038538 -
Gma13g01209 358 SMART mt_12 194 225 IPR003690 GO:0003690|GO:0006355
Gma13g01209 358 SMART mt_12 230 261 IPR003690 GO:0003690|GO:0006355
Gma13g01209 358 SMART mt_12 121 152 IPR003690 GO:0003690|GO:0006355
Gma13g01209 358 SMART mt_12 50 80 IPR003690 GO:0003690|GO:0006355
Gma13g01209 358 SMART mt_12 266 298 IPR003690 GO:0003690|GO:0006355
Gma13g01209 358 SMART mt_12 299 330 IPR003690 GO:0003690|GO:0006355
Gma13g01209 358 SMART mt_12 85 116 IPR003690 GO:0003690|GO:0006355
Gma13g01209 358 SMART mt_12 157 188 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01209 Gma-Chr13 26335434 26337301 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Gma13g01209 mTERF 8.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01209 K15032 - gmx:100793256 667.537