Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01193 ATGGTCTTTCTCATTTTCTCCACACGCTCTCCCTCTCCAAAACCTTCACATATACCCCGAAACACCAACATCCAACGGAGTGTTGTTAGGTTACGCTTATTTCAAGACATGAAGATTCCTTGTTTTTCTTGTTTCTTGCCATCGACCACTGAAGAAAACAACAACAACAACGACTACCCAGATGAAGATGGGAGCTTTCGTTTGTTCACTTACAACCAATTGAAATTAGCCACGTGCAATTTTCATTCCTCGGAGAAGGTTGGAGAAGGAGGCTTTGGATCTGTCTTTAAGGGGAAGCTTGTAGATGGATCTTTTGTGGCGGTGAAAGTGCTTTCGGTTGAGGTGGAATCCATGCGAGGAGAGAGGGAATTTGTGGCGGAATTGGCTACACTTGCAAACATCAAGCACCAAAATCTTGTAAGCCTAAAAGGGTGTTGTGTGGAAGGTGTTCATAGATATTTGGTCTATGATTATATGGAGAACAATAGCCTCTACAACGCTTTCTTAGGTTCGGAGGAGAGAAGGATGAAATTCACTTGGGAAAGAAGGAGGGacatatccataggtgtggctcggggacttgactttcttcatgagcagcttaagcctcatatcgtacatagagacatcaaagcaaaaaacatacttcttgatagtaatttcataccaaaggtttctgattttggtttggcaaaattGCTGAGAGATGAAACATCTCACATTAGCACTCGGGTTGCAGGGACATTGGGTTATCTAGCTCCAGAATATGCAAATTCTGGCCAGGTTTCGCGAAAATCAGATGTTTATAGCTTCGGAGTGTTACTTTTACAAATTGTGAGTGGCCTAGCAGTGGTGGATGCCTATCAAGACATAGAACGTTTCATAGTGGAGAAGGCGTGGACAGCGTATCAAGGTAACGATCTACTAAAGCTGGTGGATCCCATGCTTAATATGAATTTTCCAGAGGAAGAGGCCTTGAAATTCCTCAAGTTAGGGCTGCTTTGCGTGCAAGAAACTGCCAAGTTTCGGCCGCCAATGTCAGAGGTTCTAGAGAGATTGACCAAGGACATTGACATGATAGATGTTCACATTTCGAAACCAGGGTTCGTGGCTGATCTTAGGAACATCAGAATCAAACAACAAAACCTTAACTCGTCCCAGGAATCAAGTTCTGCTGGAGCAACCTTTACAAGCTCCATTTGGAGTTCGGTCAATCTTGCTCGTTAA 1227 0.3879 MVFLIFSTRSPSPKPSHIPRNTNIQRSVVRLRLFQDMKIPCFSCFLPSTTEENNNNNDYPDEDGSFRLFTYNQLKLATCNFHSSEKVGEGGFGSVFKGKLVDGSFVAVKVLSVEVESMRGEREFVAELATLANIKHQNLVSLKGCCVEGVHRYLVYDYMENNSLYNAFLGSEERRMKFTWERRRDISIGVARGLDFLHEQLKPHIVHRDIKAKNILLDSNFIPKVSDFGLAKLLRDETSHISTRVAGTLGYLAPEYANSGQVSRKSDVYSFGVLLLQIVSGLAVVDAYQDIERFIVEKAWTAYQGNDLLKLVDPMLNMNFPEEEALKFLKLGLLCVQETAKFRPPMSEVLERLTKDIDMIDVHISKPGFVADLRNIRIKQQNLNSSQESSSAGATFTSSIWSSVNLAR 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01193 408 PANTHER RECEPTOR-LIKE KINASE 41 381 - -
Gma13g01193 408 CDD STKc_IRAK 87 355 - -
Gma13g01193 408 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 41 381 - -
Gma13g01193 408 Gene3D Transferase(Phosphotransferase) domain 1 159 364 - -
Gma13g01193 408 Gene3D Phosphorylase Kinase; domain 1 47 158 - -
Gma13g01193 408 SUPERFAMILY Protein kinase-like (PK-like) 62 366 IPR011009 -
Gma13g01193 408 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Gma13g01193 408 ProSitePatterns Protein kinases ATP-binding region signature. 87 109 IPR017441 GO:0005524
Gma13g01193 408 Pfam Protein kinase domain 81 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g01193 408 SMART serkin_6 81 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g01193 408 ProSiteProfiles Protein kinase domain profile. 81 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01193 Gma-Chr13 26141446 26143627 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01193 69 372 Receptor kinase-like Gene Family AT1G56120 48.525 1.50e-90 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gma13g01193 Pkinase 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01193 - - gmx:100801728 791.186