Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01192 ATGGGTAACATAGGAAGCAGCGGCTCCAACAGCCGCCGGAGACACGGCGGCGGCGGCGGCAGCGGTAGGCGGATTCACCCGCCTCCGCCGCAGGTGATGCCGCCGCCGGAGGTCACGGCCAACCAATTCGTGTATCCTCCGGCCGCCACGCCGTATCACAACTACCCCGGGTACTACCCGGCGCCGACCACCATGCCGGCGCCGTTGCCGGCGCCGTACGACCACCACCACCGTACGGCGGTAGACCCGATGTGGGGGCGGTATCCGGTGGCGGCACCGCCGGCACCGGCGCCGTACGTGGAACACCAGAAGGCGGTTACTATTAAGAACGATGTCAACATCAAGAAGGAGACGCTTAGGATTGAGCCTGATGACGAGAATCCTGGCCGTTTCCTTGTGTCATTTACGTTTGATGCCACCGTTTCGGGGAGCATCACCATACTTTTCTTTGCAAAAGAAGGGGAAGGTTGCACACTAACTCCAATGAAAGAAAATGTTCTTCCACCCGTGACTGTAAATTTCCAGCAAGGACTTGGCCAGAAGTTTAAACAGCCAGCTGGAACTGGTATTGATTTTTCAACATTTGAGGAGTCTGAGTTATTGAAAGTAGGGGACATGGATGTCTATCCTGTTGCAATTAAAGCAGATGCATCCTCCAGCGACCATGATGAATCAAAATCAAATGAAACTCCATCATCCGGTAGCTCAAACTCTCAGATAACTCAAGCAGTGTTTGAGAAGGAGAAAGGAGAATTCCAGGTGAAGGTTGTGAAGCAGATCTTATGGGTAAATGGAATGAGGTATGAACTGCAGGAGATATATGGTATTGGAAATTCAGTGGAGAGTGATGTGGATGGGAATGACCCAGGAAAAGAGTGTGTTATATGCTTGTCAGAGCCTCGGGACACAACTGTCCTTCCATGCCGCCACATGTGTATGTGTAGCGGATGTGCGAAGGTTTTGAGGTTCCAGACAAATAGATGTCCAATCTGCAGACAACCAGTTGAGAGGCTATTGGAGATCAAAGTCGGGCCTGAGCCTGAGGAATGA 1050 0.5229 MGNIGSSGSNSRRRHGGGGGSGRRIHPPPPQVMPPPEVTANQFVYPPAATPYHNYPGYYPAPTTMPAPLPAPYDHHHRTAVDPMWGRYPVAAPPAPAPYVEHQKAVTIKNDVNIKKETLRIEPDDENPGRFLVSFTFDATVSGSITILFFAKEGEGCTLTPMKENVLPPVTVNFQQGLGQKFKQPAGTGIDFSTFEESELLKVGDMDVYPVAIKADASSSDHDESKSNETPSSGSSNSQITQAVFEKEKGEFQVKVVKQILWVNGMRYELQEIYGIGNSVESDVDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGPEPEE 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01192 349 MobiDBLite consensus disorder prediction 216 239 - -
Gma13g01192 349 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 349 - -
Gma13g01192 349 SUPERFAMILY RING/U-box 292 338 - -
Gma13g01192 349 SMART ring_2 293 331 IPR001841 -
Gma13g01192 349 MobiDBLite consensus disorder prediction 1 41 - -
Gma13g01192 349 PANTHER MAHOGUNIN 1 349 IPR045194 GO:0061630
Gma13g01192 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 342 IPR013083 -
Gma13g01192 349 ProSiteProfiles Zinc finger RING-type profile. 293 332 IPR001841 -
Gma13g01192 349 Pfam Zinc finger, C3HC4 type (RING finger) 291 337 - -
Gma13g01192 349 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 292 332 IPR045195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01192 Gma-Chr13 26123159 26127311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01192 86 312 C3H Transcription Factor Family AT3G09770 66.667 4.03e-106 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01192 - - gmx:100789032 637.491