Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01188 ATGCAAATGATGCCCGGTGACCCCTTTTCCCTATCCACTTCCATCGGAGGCTTCACTCAAGATAAGCAAAACACAAACCCTAACCCTAAACCTAATCCTCCTCCCAAGAAGAAGAGAAACCTTCCGGGAACACCAGATCCAGATGCAGAGGTCATTGCTCTCTCCCCGAAGACCCTCATGGCAACGAACcgatttatatgcgaaatatgcaacaaagggttccagagagaccagaaccttcagcttcaccgaaggggtcacaaccttccgtggaagctaaggcaaAGGTCCAACAAAGAGGTAAGGAAGAAGGTTTATATCTGCCCCGAACAAACCTGCGTCCACCACGACCCTGCAAGAGCACTCGGCGACCTCACTGGCATCAAAAAGCACTTCAGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGTGAAAAGTGCTCCAAGAAATACGCAGTCCAATCAGATTGGAAAGCCCACACCAAAACCTGTGGCACTAGAGAATACAAATGCGACTGTGGCACCCTCTTCTCCAGGAAAGACAGCTTCATTACTCATAGAGCATTCTGCGATGCATTGGCTGAAGAGAGTGCTAGGCTCACATCAGTTACAACAACAAATCTAAATTTCAAGAGTGAAGAGGGTGGTAATAATGTGATGAACTCGCAGCAGCATGGTTTGGGAGGACATGGACTAATTGGAGCACAAAGTCTTCAAAATGTTTCTGGCATTCCACAATTTGGTTCACATGGTTTTCGTTTGGATTTCAATGGAATGGAACAACAAATTAGGCCAAGTTTGTCACTATGGTTGAACCAGGGGAATCACCAGATGAATAGTAATAATAATAACATTAATAGCAACAACAATAGTGCTTCCGATGCGGGACCCAATTACATGTCATCATCAGGTTTGCCTGAGATTGTGCAAATGGCTCATGCTAATGCTTTGATGGGTTGTTCTTCATCGATGGTGTCTAATTTTGGAGGAGTTCATGCGGGTTCTAATTCGAGCAGTGCAAATCTTTCACTAGGGAAAAGAGGGGAAGCATGTGGAAGTACTGTAGTGGACTTGGCTTCTATTTATAATAACTCTGAGGGTCAAAACAAGAATTCAAAGCCTGCTTCACCCATGTCAGCAACTGCGCTTCTTCAGAAAGCAGCGCAAATGGGTTCCACCAGAAGCACCAACCCTTCTATTTTCAGTGGTAGTTTTGGAGTGATTAACTCACCTTCCTCACAAACTACCAGTCTCAACAACAACAACAACGGAGGTGCAGCCATGATGCTGGCAAGTAACACTTCTACTGCTGCTGCAAATGCAAATGACTTTAGCTCATTGAGGCATTCATCAAACAGTTTTGACCAGCTTGTGATGCAAACCAATGCGCAGTTGCAAAGTGAGCCTGTGAAGTTGAAGCTTCATTCAAATGGTATGGAGAACAATTTGACAAGGGATTTTCTTGGTGTCAGCGGTGGAGGAGGAGGTGGTGGTGGACCTCAGTTTCTTCCCCAAGAACTTGGAAAGTTTGCTTCCATGGGCTCACCAATGGGGTTGAGCCAATTCACAAGTAACCAATGA 1578 0.4252 MQMMPGDPFSLSTSIGGFTQDKQNTNPNPKPNPPPKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEQTCVHHDPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARLTSVTTTNLNFKSEEGGNNVMNSQQHGLGGHGLIGAQSLQNVSGIPQFGSHGFRLDFNGMEQQIRPSLSLWLNQGNHQMNSNNNNINSNNNSASDAGPNYMSSSGLPEIVQMAHANALMGCSSSMVSNFGGVHAGSNSSSANLSLGKRGEACGSTVVDLASIYNNSEGQNKNSKPASPMSATALLQKAAQMGSTRSTNPSIFSGSFGVINSPSSQTTSLNNNNNGGAAMMLASNTSTAAANANDFSSLRHSSNSFDQLVMQTNAQLQSEPVKLKLHSNGMENNLTRDFLGVSGGGGGGGGPQFLPQELGKFASMGSPMGLSQFTSNQ 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01188 525 Gene3D Classic Zinc Finger 120 198 - -
Gma13g01188 525 SUPERFAMILY beta-beta-alpha zinc fingers 64 161 IPR036236 -
Gma13g01188 525 Pfam Zinc-finger double-stranded RNA-binding 65 87 IPR022755 -
Gma13g01188 525 PANTHER ZINC FINGER PROTEIN JACKDAW 7 513 IPR033243 GO:0003700
Gma13g01188 525 MobiDBLite consensus disorder prediction 1 26 - -
Gma13g01188 525 Gene3D Classic Zinc Finger 43 117 - -
Gma13g01188 525 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 87 IPR013087 -
Gma13g01188 525 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Gma13g01188 525 MobiDBLite consensus disorder prediction 1 49 - -
Gma13g01188 525 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 513 - -
Gma13g01188 525 SMART c2h2final6 65 87 IPR013087 -
Gma13g01188 525 SMART c2h2final6 106 136 IPR013087 -
Gma13g01188 525 SMART c2h2final6 141 161 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01188 Gma-Chr13 26081768 26084038 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01188 1 261 IDZ Gene Family AT5G03150 64.236 1.43e-122 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma13g01188 zf-C2H2_jaz 7.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01188 K25870 - gmx:100801182 927.161